Miyakogusa Predicted Gene
- Lj0g3v0120619.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SKC9_LOTJA |
369 |
51.2 |
65.9 |
(tr|I3SKC9) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT4G00160.1 |
137 |
30.3 |
47.2 |
| Symbols: | F-box/RNI-like/FBD-like domains-containing protein | chr4:63465-65365 FORWARD LENGTH=453 |
| Medicago |
Medtr3g036250.1 |
222 |
38.2 |
54.1 |
| cyclin-like F-box protein | LC | chr3:13465686-13464502 | 20130731 |
| Soybean |
Glyma08g46590.2 |
279 |
44.5 |
58.0 |
|
| LJGI |
gnl|LJGI|GO005265 |
868 |
98.5 |
98.5 |
similar to UniRef100_A5N307 Cluster: Predicted transporter protein; n=1; Clostridium kluyveri DSM 555|Rep: Predicted transporter protein - Clostridium kluyveri DSM 555, partial (5%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0120619.2 |
length: 395 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
3e-06 |
4-42 |
| ProfileScan |
PS50181 |
FBOX |
8.650 |
2-50 |
| superfamily |
SSF81383 |
F-box |
2.8e-09 |
2-45 |
| IPR006566 |
FBD |
| HMMPfam |
PF08387 |
FBD |
1.3e-12 |
315-364 |
| HMMSmart |
SM00579 |
domain |
0.00077 |
323-395 |
| IPR013101 |
Leucine-rich repeat 2 |
| HMMPfam |
PF07723 |
LRR_2 |
9.3e-05 |
165-189 |
| no_ID |
|
| Gene3D |
G3DSA:3.80.10.10 |
no description |
1.4e-15 |
3-308 |
| HMMPanther |
PTHR32212 |
FAMILY |
4.7e-43 |
2-206 |
| superfamily |
SSF52047 |
RNI-like |
3.3e-09 |
112-358 |
- Wolf-PSORT
Lj0g3v0120619.2 cyto 8, nucl 3, chlo 1, plas 1, cysk 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0120619.2 |
|