Miyakogusa Predicted Gene
- Lj0g3v0114199.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
H8WVC5_LOTJA |
208 |
94.2 |
96.2 |
(tr|H8WVC5) E3 ubiquitin ligase-like protein OS=Lotus japonicus GN=SINA3 PE=2 SV=1 |
| TAIR_pep |
AT3G61790.1 |
99.4 |
71.2 |
83.1 |
| Symbols: | Protein with RING/U-box and TRAF-like domains | chr3:22871974-22873543 REVERSE LENGTH=326 |
| Medicago |
Medtr3g017590.1 |
176 |
77.9 |
84.6 |
| ubiquitin ligase SINAT3 | HC | chr3:5040231-5036144 | 20130731 |
| Soybean |
Glyma13g26890.2 |
186 |
84.6 |
87.5 |
|
| LJGI |
gnl|LJGI|TC71497 |
184 |
87.8 |
87.8 |
similar to UniRef100_A8W462 Cluster: SINA3; n=1; Medicago truncatula|Rep: SINA3 - Medicago truncatula (Barrel medic), partial (48%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0114199.1 |
length: 142 aa. |
| IPR001841 |
Zinc finger, RING-type |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| ProfileScan |
PS50089 |
ZF_RING_2 |
9.288 |
56-92 |
| IPR004162 |
Seven-in-absentia protein, sina |
| Cellular Component |
GO:0005634 |
nucleus |
|
|
| Biological Process |
GO:0006511 |
ubiquitin-dependent protein catabolic process |
|
|
| Biological Process |
GO:0007275 |
multicellular organismal development |
|
|
| HMMPanther |
PTHR10315 |
SEVEN |
1.4e-22 |
49-98 |
| IPR013083 |
Zinc finger, RING/FYVE/PHD-type |
| Gene3D |
G3DSA:3.30.40.10 |
no description |
2.7e-09 |
45-97 |
| no_ID |
|
| superfamily |
SSF57850 |
RING/U-box |
4.9e-09 |
48-104 |
- Wolf-PSORT
Lj0g3v0114199.1 cyto 6, extr 4, chlo 3, cyto_nucl 3, cyto_pero 3, cyto_E.R. 3, cyto_plas 3
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0114199.1 |
|