Miyakogusa Predicted Gene
- Lj0g3v0113409.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1KZ45_SOYBN |
262 |
39.8 |
60.2 |
(tr|I1KZ45) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT4G26340.1 |
155 |
31.9 |
47.9 |
| Symbols: | F-box/RNI-like/FBD-like domains-containing protein | chr4:13324130-13325559 FORWARD LENGTH=419 |
| Medicago |
Medtr1g041245.1 |
232 |
38.7 |
55.4 |
| cyclin-like F-box protein | HC | chr1:15330666-15327969 | 20130731 |
| Soybean |
Glyma08g46320.1 |
262 |
39.8 |
60.2 |
|
| LJGI |
gnl|LJGI|TC68402 |
1447 |
100.0 |
100.0 |
weakly similar to UniRef100_Q8LF09 Cluster: F-box/FBD/LRR-repeat protein At4g00160; n=2; Arabidopsis thaliana|Rep: F-box/FBD/LRR-repeat protein At4g00160 - Arabidopsis thaliana (Mouse-ear cress), partial (13%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0113409.1 |
length: 367 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMSmart |
SM00256 |
A |
1.6e-06 |
8-47 |
| ProfileScan |
PS50181 |
FBOX |
11.644 |
2-50 |
| superfamily |
SSF81383 |
F-box |
1e-11 |
3-45 |
| IPR006566 |
FBD |
| HMMPfam |
PF08387 |
FBD |
2.5e-15 |
288-336 |
| HMMSmart |
SM00579 |
domain |
2e-12 |
296-367 |
| IPR013101 |
Leucine-rich repeat 2 |
| HMMPfam |
PF07723 |
LRR_2 |
0.00024 |
152-177 |
| no_ID |
|
| Gene3D |
G3DSA:3.80.10.10 |
no description |
1.7e-19 |
3-274 |
| HMMPanther |
PTHR32484 |
FAMILY |
4.6e-49 |
1-367 |
| HMMPfam |
PF12937 |
F-box-like |
2.9e-08 |
5-38 |
| superfamily |
SSF52047 |
RNI-like |
6.5e-12 |
93-289 |
- Wolf-PSORT
Lj0g3v0113409.1 chlo 5, E.R. 3, chlo_mito 3, nucl 2, cyto 2, cyto_nucl 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0113409.1 |
|