Miyakogusa Predicted Gene

Lj0g3v0110789.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SUS3_LOTJA 194 80.5 81.2 (tr|I3SUS3) Histone H2A OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT5G02560.1 174 70.8 76.9 | Symbols: HTA12 | histone H2A 12 | chr5:575437-576456 FORWARD LENGTH=153
Medicago Medtr2g096570.1 188 76.9 80.0 | core histone H2A/H2B/H3/H4 | HC | chr2:41245010-41243919 | 20130731
Soybean Glyma13g40940.1 191 79.7 82.0  
LJGI gnl|LJGI|TC59651 910 100.0 100.0 homologue to UniRef100_Q2HU65 Cluster: Probable histone H2A.2; n=1; Medicago truncatula|Rep: Probable histone H2A.2 - Medicago truncatula (Barrel medic), partial (93%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0110789.1 length: 152 aa.
IPR002119 Histone H2A
method AccNumber shortName E-value location
Cellular Component GO:0000786 nucleosome    
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006334 nucleosome assembly    
FPrintScan PR00620 HISTONEH2A 2.6e-51 23-45
52-67
67-80
81-95
109-127
HMMSmart SM00414 Histone 1e-78 12-132
PatternScan PS00046 HISTONE_H2A NA 31-37
IPR007125 Histone core
Molecular Function GO:0003677 DNA binding    
HMMPfam PF00125 Histone 3.8e-23 27-100
IPR009072 Histone-fold
Molecular Function GO:0046982 protein heterodimerization activity    
Gene3D G3DSA:1.10.20.10 no description 1.2e-63 16-131
superfamily SSF47113 Histone-fold 2.1e-41 11-135
no_ID  
HMMPanther PTHR23430 HISTONE 3.4e-84 21-141
Seg seg seg NA 6-24
59-76
Wolf-PSORT
Lj0g3v0110789.1	nucl 12, cyto 1, pero 1, cyto_pero 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0110789.1