Miyakogusa Predicted Gene
- Lj0g3v0107049.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MAX0_SOYBN |
439 |
65.1 |
76.0 |
(tr|I1MAX0) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G72220.1 |
202 |
48.4 |
61.8 |
| Symbols: | RING/U-box superfamily protein | chr1:27184388-27185629 REVERSE LENGTH=413 |
| Medicago |
Medtr5g064890.1 |
376 |
57.7 |
66.9 |
| RING-H2 zinc finger protein | HC | chr5:27267475-27269210 | 20130731 |
| Soybean |
Glyma14g35550.1 |
439 |
65.1 |
76.0 |
|
| LJGI |
gnl|LJGI|TC80726 |
973 |
99.2 |
99.2 |
similar to UniRef100_A7NUT1 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (27%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0107049.1 |
length: 371 aa. |
| IPR001841 |
Zinc finger, RING-type |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| HMMPfam |
PF13639 |
zf-RING_2 |
4.3e-15 |
149-193 |
| HMMSmart |
SM00184 |
Ring |
8.6e-08 |
150-191 |
| ProfileScan |
PS50089 |
ZF_RING_2 |
12.917 |
150-192 |
| IPR013083 |
Zinc finger, RING/FYVE/PHD-type |
| Gene3D |
G3DSA:3.30.40.10 |
no description |
1e-18 |
147-195 |
| no_ID |
|
| HMMPanther |
PTHR14155 |
RING |
2.5e-42 |
41-219 |
| superfamily |
SSF57850 |
RING/U-box |
3.6e-22 |
123-217 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
61 |
82 |
- Wolf-PSORT
Lj0g3v0107049.1 E.R. 4, chlo 3, E.R._plas 3, nucl 2, plas 2, chlo_mito 2, nucl_plas 2, cyto_E.R. 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0107049.1 |
|