Miyakogusa Predicted Gene
- Lj0g3v0104259.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SCY1_LOTJA |
341 |
100.0 |
100.0 |
(tr|I3SCY1) DNA primase OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT5G41880.1 |
248 |
72.4 |
85.5 |
| Symbols: POLA3, POLA4 | DNA primases;DNA primases | chr5:16761071-16764074 FORWARD LENGTH=451 |
| Medicago |
Medtr3g062490.1 |
278 |
81.5 |
88.5 |
| DNA primase small subunit | HC | chr3:28213216-28220088 | 20130731 |
| Soybean |
Glyma02g45610.1 |
292 |
88.6 |
92.4 |
|
| LJGI |
gnl|LJGI|TC81177 |
954 |
100.0 |
100.0 |
similar to UniRef100_A7QN91 Cluster: DNA primase; n=1; Vitis vinifera|Rep: DNA primase - Vitis vinifera (Grape), partial (61%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0104259.1 |
length: 182 aa. |
| IPR002755 |
DNA primase, small subunit |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003896 |
DNA primase activity |
|
|
| Biological Process |
GO:0006269 |
DNA replication, synthesis of RNA primer |
|
|
| HMMPfam |
PF01896 |
DNA_primase_S |
6.8e-10 |
121-162 |
| IPR014052 |
DNA primase, small subunit, eukaryotic/archaeal |
| Molecular Function |
GO:0003896 |
DNA primase activity |
|
|
| Biological Process |
GO:0006269 |
DNA replication, synthesis of RNA primer |
|
|
| HMMPanther |
PTHR10536 |
DNA |
1.8e-64 |
1-160 |
| no_ID |
|
| Gene3D |
G3DSA:3.90.920.10 |
no description |
2e-44 |
13-160 |
| superfamily |
SSF56747 |
Prim-pol |
4e-39 |
13-160 |
- Wolf-PSORT
Lj0g3v0104259.1 chlo 6, nucl 4, cyto 2, extr 2, cysk_nucl 2, nucl_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0104259.1 |
|