Miyakogusa Predicted Gene
- Lj0g3v0101539.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MW66_SOYBN |
391 |
86.3 |
92.9 |
(tr|I1MW66) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT5G35910.1 |
360 |
77.7 |
88.6 |
| Symbols: | Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain | chr5:14029871-14035405 REVERSE LENGTH=870 |
| Medicago |
Medtr6g027760.1 |
387 |
82.9 |
95.7 |
| exosome complex exonuclease RRP6 | HC | chr6:9716121-9707250 | 20130731 |
| Soybean |
Glyma17g24130.1 |
390 |
86.3 |
92.9 |
|
| LJGI |
gnl|LJGI|TC62119 |
527 |
99.6 |
99.6 |
similar to UniRef100_Q9FFL2 Cluster: Nucleolar protein-like; n=1; Arabidopsis thaliana|Rep: Nucleolar protein-like - Arabidopsis thaliana (Mouse-ear cress), partial (11%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0101539.1 |
length: 228 aa. |
| IPR002562 |
3'-5' exonuclease domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| Biological Process |
GO:0006139 |
nucleobase-containing compound metabolic process |
|
|
| Molecular Function |
GO:0008408 |
3'-5' exonuclease activity |
|
|
| HMMPfam |
PF01612 |
DNA_pol_A_exo1 |
2.5e-29 |
100-228 |
| HMMSmart |
SM00474 |
3'-5' |
2.5e-12 |
97-228 |
| IPR012337 |
Ribonuclease H-like domain |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| superfamily |
SSF53098 |
Ribonuclease |
1.1e-47 |
32-228 |
| no_ID |
|
| Gene3D |
G3DSA:3.30.420.10 |
no description |
1.1e-09 |
97-217 |
| HMMPanther |
PTHR12124 |
POLYMYOSITIS/SCLERODERMA |
3.2e-95 |
25-228 |
| HMMPanther |
PTHR12124:SF2 |
POLYMYOSITIS/SCLERODERMA |
3.2e-95 |
25-228 |
| Seg |
seg |
seg |
NA |
4-17 |
- Wolf-PSORT
Lj0g3v0101539.1 cyto 8.5, cyto_E.R. 5.5, chlo 2, E.R. 1.5, pero 1, cysk 1, chlo_mito 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0101539.1 |
|