Miyakogusa Predicted Gene
- Lj0g3v0101459.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7I2Y6_MEDTR |
300 |
62.4 |
69.2 |
(tr|G7I2Y6) General transcription factor IIH subunit OS=Medicago truncatula GN=MTR_1g090110 PE=4 SV=1 |
| TAIR_pep |
AT1G55750.1 |
195 |
43.4 |
58.9 |
| Symbols: | BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) | chr1:20840449-20845135 REVERSE LENGTH=591 |
| Medicago |
Medtr1g090110.1 |
300 |
62.4 |
69.2 |
| TFIIH basal transcription factor complex subunit, putative | HC | chr1:40358314-40346004 | 20130731 |
| Soybean |
Glyma20g33940.1 |
299 |
61.9 |
70.9 |
|
| LJGI |
gnl|LJGI|FS362311 |
95.6 |
90.0 |
90.0 |
similar to UniRef100_Q1RSH7 Cluster: General transcription factor IIH component, related; n=1; Medicago truncatula|Rep: General transcription factor IIH component, related - Medicago truncatula (Barrel medic), partial (20%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0101459.1 |
length: 239 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| Coil |
coil |
coiled-coil |
NA |
69-90 |
| HMMPanther |
PTHR24412 |
FAMILY |
4.8e-14 |
1-91 |
| HMMPanther |
PTHR24412:SF85 |
SUBFAMILY |
4.8e-14 |
1-91 |
| Seg |
seg |
seg |
NA |
157-171 |
- Wolf-PSORT
Lj0g3v0101459.1 nucl 7, extr 3, cyto 2, chlo 1, cysk 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0101459.1 |
|