Miyakogusa Predicted Gene

Lj0g3v0101289.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL D7TS57_VITVI 278 92.4 97.2 (tr|D7TS57) Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00340 PE=3 SV=1

TAIR_pep AT3G23990.1 265 89.6 97.9 | Symbols: HSP60, HSP60-3B | heat shock protein 60 | chr3:8669013-8672278 FORWARD LENGTH=577

Medicago Medtr1g090140.1 273 91.7 97.2 | TCP-1/cpn60 chaperonin family protein | HC | chr1:40381503-40376286 | 20130731

Soybean Glyma10g33680.1 278 91.7 98.6

LJGI gnl|LJGI|TC69512 856 100.0 100.0 homologue to UniRef100_Q1RSH3 Cluster: GroEL-like chaperone, ATPase; n=1; Medicago truncatula|Rep: GroEL-like chaperone, ATPase - Medicago truncatula (Barrel medic), partial (37%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0101289.1 length: 144 aa.

IPR002423 Chaperonin Cpn60/TCP-1

method AccNumber shortName E-value location

Molecular Function GO:0005524 ATP binding

Biological Process GO:0044267 cellular protein metabolic process

HMMPanther PTHR11353 CHAPERONIN 3.7e-72 1-144

HMMPfam PF00118 Cpn60_TCP1 3.5e-27 54-143

superfamily SSF48592 GroEL 1.2e-38 33-143

IPR017998 Chaperone tailless complex polypeptide 1 (TCP-1)

FPrintScan PR00304 TCOMPLEXTCP1 1.1e-26 56-72
78-96
112-131

IPR027413 GroEL-like equatorial domain

Gene3D G3DSA:1.10.560.10 no description 2.5e-37 34-143

no_ID

HMMPanther PTHR11353:SF9 CHAPERONIN-60KDA, 3.7e-72 1-144

Wolf-PSORT

Lj0g3v0101289.1 chlo 8, mito 6

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0101289.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	D7TS57_VITVI	278	92.4	97.2	(tr\|D7TS57) Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0051g00340 PE=3 SV=1
TAIR_pep	AT3G23990.1	265	89.6	97.9	\| Symbols: HSP60, HSP60-3B \| heat shock protein 60 \| chr3:8669013-8672278 FORWARD LENGTH=577
Medicago	Medtr1g090140.1	273	91.7	97.2	\| TCP-1/cpn60 chaperonin family protein \| HC \| chr1:40381503-40376286 \| 20130731
Soybean	Glyma10g33680.1	278	91.7	98.6
LJGI	gnl\|LJGI\|TC69512	856	100.0	100.0	homologue to UniRef100_Q1RSH3 Cluster: GroEL-like chaperone, ATPase; n=1; Medicago truncatula\|Rep: GroEL-like chaperone, ATPase - Medicago truncatula (Barrel medic), partial (37%)

IPR002423	Chaperonin Cpn60/TCP-1
Lj0g3v0101289.1				length: 144 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0044267	cellular protein metabolic process
HMMPanther	PTHR11353	CHAPERONIN	3.7e-72	1-144
HMMPfam	PF00118	Cpn60_TCP1	3.5e-27	54-143
superfamily	SSF48592	GroEL	1.2e-38	33-143
IPR017998	Chaperone tailless complex polypeptide 1 (TCP-1)
FPrintScan	PR00304	TCOMPLEXTCP1	1.1e-26	56-72 78-96 112-131
IPR027413	GroEL-like equatorial domain
Gene3D	G3DSA:1.10.560.10	no description	2.5e-37	34-143
no_ID
HMMPanther	PTHR11353:SF9	CHAPERONIN-60KDA,	3.7e-72	1-144