Miyakogusa Predicted Gene
- Lj0g3v0101279.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1M2A4_SOYBN |
276 |
80.4 |
86.5 |
(tr|I1M2A4) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G11160.1 |
192 |
61.7 |
71.6 |
| Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:3733406-3739363 FORWARD LENGTH=1021 |
| Medicago |
Medtr2g012630.1 |
247 |
77.3 |
86.5 |
| katanin p80 WD40 repeat subunit B1-like protein | HC | chr2:3190941-3179834 | 20130731 |
| Soybean |
Glyma13g31790.1 |
276 |
80.4 |
86.5 |
|
| LJGI |
gnl|LJGI|TC70763 |
967 |
99.8 |
99.8 |
similar to UniRef100_A7R3U4 Cluster: Chromosome undetermined scaffold_569, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_569, whole genome shotgun sequence - Vitis vinifera (Grape), partial (85%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0101279.1 |
length: 163 aa. |
| IPR026962 |
Katanin p80 subunit B1 |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0008017 |
microtubule binding |
|
|
| Cellular Component |
GO:0008352 |
katanin complex |
|
|
| Biological Process |
GO:0051013 |
microtubule severing |
|
|
| HMMPanther |
PTHR19845 |
KATANIN |
6.7e-53 |
1-162 |
| no_ID |
|
| HMMPfam |
PF13925 |
Katanin_con80 |
3.1e-49 |
1-161 |
| Seg |
seg |
seg |
NA |
84-97 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
51 |
73 |
| 83 |
105 |
- Wolf-PSORT
Lj0g3v0101279.1 chlo 6, mito 3, E.R. 2, nucl 1, cyto 1, vacu 1, cyto_nucl 1, E.R._plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0101279.1 |
|