Miyakogusa Predicted Gene
- Lj0g3v0100739.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
C6THD8_SOYBN |
311 |
71.4 |
77.5 |
(tr|C6THD8) Putative uncharacterized protein OS=Glycine max PE=2 SV=1 |
| TAIR_pep |
AT4G13590.1 |
231 |
63.7 |
77.1 |
| Symbols: | Uncharacterized protein family (UPF0016) | chr4:7901369-7903792 REVERSE LENGTH=359 |
| Medicago |
Medtr1g046730.1 |
310 |
69.4 |
75.2 |
| GDT1-like protein | HC | chr1:17623011-17631961 | 20130731 |
| Soybean |
Glyma10g25490.1 |
309 |
71.4 |
77.5 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0100739.1 |
length: 231 aa. |
| IPR001727 |
Uncharacterised protein family UPF0016 |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0016020 |
membrane |
|
|
| HMMPanther |
PTHR12608 |
TRANSMEMBRANE |
8.7e-37 |
25-231 |
| HMMPfam |
PF01169 |
UPF0016 |
8.1e-19 |
140-220 |
| PatternScan |
PS01214 |
UPF0016 |
NA |
151-160 |
| no_ID |
|
| Seg |
seg |
seg |
NA |
8-27 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
15 |
33 |
| 102 |
124 |
| 136 |
158 |
| 174 |
196 |
| 205 |
227 |
- Wolf-PSORT
Lj0g3v0100739.1 chlo 6, plas 6, golg 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0100739.1 |
|