Miyakogusa Predicted Gene

Lj0g3v0099909.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7K1P2_MEDTR 594 88.0 93.4 (tr|G7K1P2) Glucan endo-1,3-beta-glucosidase OS=Medicago truncatula GN=MTR_5g078200 PE=3 SV=1

TAIR_pep AT1G66250.1 478 75.1 89.6 | Symbols: | O-Glycosyl hydrolases family 17 protein | chr1:24693063-24695416 FORWARD LENGTH=505

Medicago Medtr5g078200.1 594 88.0 93.4 | glucan endo-1,3-beta-glucosidase-like protein | HC | chr5:33413288-33417329 | 20130731

Soybean Glyma14g39510.1 562 85.3 91.0

LJGI gnl|LJGI|TC74872 632 100.0 100.0 similar to UniRef100_A2Q370 Cluster: Glycoside hydrolase, family 17; Virulence factor, pectin lyase fold; X8; n=1; Medicago truncatula|Rep: Glycoside hydrolase, family 17; Virulence factor, pectin lyase fold; X8 - Medicago truncatula (Barrel medic), partial (21%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0099909.1 length: 324 aa.

IPR000490 Glycoside hydrolase, family 17

method AccNumber shortName E-value location

Molecular Function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Biological Process GO:0005975 carbohydrate metabolic process

HMMPfam PF00332 Glyco_hydro_17 6.6e-49 3-169

PatternScan PS00587 GLYCOSYL_HYDROL_F17 NA 84-97

IPR012946 X8

HMMPfam PF07983 X8 3.3e-16 187-258

HMMSmart SM00768 Possibly 3.8e-48 186-271

IPR013781 Glycoside hydrolase, catalytic domain

Molecular Function GO:0003824 catalytic activity

Biological Process GO:0005975 carbohydrate metabolic process

Gene3D G3DSA:3.20.20.80 no description 1.7e-59 2-169

IPR017853 Glycoside hydrolase, superfamily

superfamily SSF51445 (Trans)glycosidases 2.5e-49 1-171

no_ID

HMMPanther PTHR32227 FAMILY 7.1e-189 2-300

HMMPanther PTHR32227:SF31 SUBFAMILY 7.1e-189 2-300

Seg seg seg NA 288-296

Wolf-PSORT

Lj0g3v0099909.1 nucl 7, cyto 3, chlo 2, mito 1, golg 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0099909.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7K1P2_MEDTR	594	88.0	93.4	(tr\|G7K1P2) Glucan endo-1,3-beta-glucosidase OS=Medicago truncatula GN=MTR_5g078200 PE=3 SV=1
TAIR_pep	AT1G66250.1	478	75.1	89.6	\| Symbols: \| O-Glycosyl hydrolases family 17 protein \| chr1:24693063-24695416 FORWARD LENGTH=505
Medicago	Medtr5g078200.1	594	88.0	93.4	\| glucan endo-1,3-beta-glucosidase-like protein \| HC \| chr5:33413288-33417329 \| 20130731
Soybean	Glyma14g39510.1	562	85.3	91.0
LJGI	gnl\|LJGI\|TC74872	632	100.0	100.0	similar to UniRef100_A2Q370 Cluster: Glycoside hydrolase, family 17; Virulence factor, pectin lyase fold; X8; n=1; Medicago truncatula\|Rep: Glycoside hydrolase, family 17; Virulence factor, pectin lyase fold; X8 - Medicago truncatula (Barrel medic), partial (21%)

IPR000490	Glycoside hydrolase, family 17
Lj0g3v0099909.1				length: 324 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
Biological Process	GO:0005975	carbohydrate metabolic process
HMMPfam	PF00332	Glyco_hydro_17	6.6e-49	3-169
PatternScan	PS00587	GLYCOSYL_HYDROL_F17	NA	84-97
IPR012946	X8
HMMPfam	PF07983	X8	3.3e-16	187-258
HMMSmart	SM00768	Possibly	3.8e-48	186-271
IPR013781	Glycoside hydrolase, catalytic domain
Molecular Function	GO:0003824	catalytic activity
Biological Process	GO:0005975	carbohydrate metabolic process
Gene3D	G3DSA:3.20.20.80	no description	1.7e-59	2-169
IPR017853	Glycoside hydrolase, superfamily
superfamily	SSF51445	(Trans)glycosidases	2.5e-49	1-171
no_ID
HMMPanther	PTHR32227	FAMILY	7.1e-189	2-300
HMMPanther	PTHR32227:SF31	SUBFAMILY	7.1e-189	2-300
Seg	seg	seg	NA	288-296