Miyakogusa Predicted Gene
- Lj0g3v0099779.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
Q42867_LUPAL |
97.8 |
71.2 |
78.8 |
(tr|Q42867) TRNA nucleotidyltransferase OS=Lupinus albus GN=CCA1 PE=2 SV=1 |
| TAIR_pep |
AT1G22660.2 |
76.3 |
49.3 |
68.0 |
| Symbols: | Polynucleotide adenylyltransferase family protein | chr1:8017410-8021538 FORWARD LENGTH=603 |
| Medicago |
Medtr1g096870.1 |
91.7 |
60.0 |
74.7 |
| tRNA nucleotidyltransferase | HC | chr1:43650768-43643846 | 20130731 |
| Soybean |
Glyma20g31440.1 |
94.4 |
68.2 |
78.8 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0099779.1 |
length: 138 aa. |
| IPR002646 |
Poly A polymerase, head domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003723 |
RNA binding |
|
|
| Biological Process |
GO:0006396 |
RNA processing |
|
|
| Molecular Function |
GO:0016779 |
nucleotidyltransferase activity |
|
|
| HMMPfam |
PF01743 |
PolyA_pol |
2.1e-07 |
42-100 |
| no_ID |
|
| Gene3D |
G3DSA:3.30.460.10 |
no description |
2e-12 |
35-100 |
| HMMPanther |
PTHR13734 |
TRNA-NUCLEOTIDYLTRANSFERASE/POLY(A) |
1.9e-20 |
41-96 |
| HMMPanther |
PTHR13734:SF10 |
TRNA |
1.9e-20 |
41-96 |
| superfamily |
SSF81301 |
Nucleotidyltransferase |
7.4e-09 |
40-119 |
- Wolf-PSORT
Lj0g3v0099779.1 chlo 8, mito 4, nucl 1, cyto 1, cyto_nucl 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0099779.1 |
Not targeted |
-83.253 |
-28.130 |
-13.136 |
99.27% |
-41.987
|