Miyakogusa Predicted Gene

Lj0g3v0099669.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q2HTU1_MEDTR 1211 80.5 88.6 (tr|Q2HTU1) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_4g091600 PE=4 SV=2
TAIR_pep AT2G17140.1 881 57.8 73.6 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:7462820-7465740 FORWARD LENGTH=874
Medicago Medtr4g091600.1 1211 80.5 88.6 | PPR containing plant-like protein | HC | chr4:36298713-36301989 | 20130731
Soybean Glyma08g06500.1 1154 77.0 83.7  
LJGI gnl|LJGI|TC79479 694 100.0 100.0 homologue to UniRef100_Q2HTU1 Cluster: Tetratricopeptide-like helical; n=1; Medicago truncatula|Rep: Tetratricopeptide-like helical - Medicago truncatula (Barrel medic), partial (13%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0099669.1 length: 733 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.5 188-217
222-252
455-484
594-622
HMMPfam PF12854 PPR_1 5.8e-10 148-178
322-352
HMMPfam PF13041 PPR_2 2.1e-15 8-57
76-121
254-301
381-430
486-535
HMMPfam PF13812 PPR_3 0.26 629-656
HMMTigr TIGR00756 PPR: 6.5e-10 11-45
47-70
78-112
113-139
152-179
188-221
222-256
257-291
327-356
384-418
419-450
455-488
489-523
ProfileScan PS51375 PPR 7.629 9-43
76-110
44-74
111-141
150-184
185-219
220-254
255-289
325-359
290-324
382-416
417-451
452-486
487-521
522-557
591-625
626-660
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 2.4e-07 485-584
no_ID  
Coil coil coiled-coil NA 639-660
HMMPanther PTHR24015 FAMILY 4.2e-262 1-610
HMMPanther PTHR24015:SF165EMB2654 (EMBRYO 4.2e-262 1-610
Seg seg seg NA 193-203
693-704
superfamily SSF48452 TPR-like 0.0027 255-354
Wolf-PSORT
Lj0g3v0099669.1	cyto_nucl 5, nucl 4.5, cyto 4.5, chlo 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0099669.1