Miyakogusa Predicted Gene

Lj0g3v0099219.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JU70_SOYBN 239 86.5 93.7 (tr|I1JU70) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G25150.1 155 54.6 71.5 | Symbols: TAF5 | TBP-associated factor 5 | chr5:8677117-8682058 FORWARD LENGTH=669
Medicago Medtr3g106080.1 231 83.5 90.6 | TBP-associated factor 5 | HC | chr3:48932864-48942802 | 20130731
Soybean Glyma04g06540.1 239 86.5 93.7  
LJGI gnl|LJGI|TC58844 737 100.0 100.0 similar to UniRef100_A7P5W9 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (23%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0099219.1 length: 124 aa.
IPR006594 LisH dimerisation motif
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
ProfileScan PS50896 LISH 8.357 2-34
IPR007582 TFIID subunit, WD40-associated region
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF04494 TFIID_90kDa 4.1e-26 48-122
no_ID  
HMMPanther PTHR19879 TRANSCRIPTION 3.2e-20 4-115
HMMPanther PTHR19879:SF0 SUBFAMILY 3.2e-20 4-115
Putative transmembrane regions
  From To
TM segments
SOSUI		 82 104
Wolf-PSORT
Lj0g3v0099219.1	cyto 5, nucl 3, mito 3, cyto_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0099219.1 Not targeted -46.161 -0.479 -16.997 66.99% -28.685