Miyakogusa Predicted Gene

Lj0g3v0098939.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7LI80_MEDTR 259 50.2 68.2 (tr|G7LI80) Nbs-lrr resistance protein OS=Medicago truncatula GN=MTR_8g018260 PE=4 SV=1

TAIR_pep AT1G72890.1 193 39.8 63.7 | Symbols: | Disease resistance protein (TIR-NBS class) | chr1:27429947-27431717 FORWARD LENGTH=438

Medicago Medtr8g018170.1 263 51.7 67.8 | disease resistance protein (TIR-NBS-LRR class), putative | LC | chr8:6146125-6135140 | 20130731

Soybean Glyma13g03770.1 256 48.6 70.0

LJGI gnl|LJGI|FS332780 196 82.2 82.2 weakly similar to UniRef100_A7QGF1 Cluster: Chromosome undetermined scaffold_92, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_92, whole genome shotgun sequence - Vitis vinifera (Grape), partial (16%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0098939.1 length: 265 aa.

IPR000157 Toll/interleukin-1 receptor homology (TIR) domain

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

Biological Process GO:0007165 signal transduction

HMMPfam PF01582 TIR 1.8e-33 17-146

HMMSmart SM00255 Toll 5.2e-45 14-151

ProfileScan PS50104 TIR 27.853 13-151

superfamily SSF52200 Toll/Interleukin 9.1e-42 3-154

IPR002182 NB-ARC

Molecular Function GO:0043531 ADP binding

HMMPfam PF00931 NB-ARC 2.1e-07 202-249

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 3.4e-06 206-238

no_ID

Gene3D G3DSA:3.40.50.10140 no description 1e-20 13-144

Gene3D G3DSA:3.40.50.300 no description 3e-05 201-233

HMMPanther PTHR11017 LEUCINE-RICH 3.2e-68 1-262

HMMPanther PTHR11017:SF130DISEASE RESISTANCE 3.2e-68 1-262

Wolf-PSORT

Lj0g3v0098939.1 nucl 7, chlo 2, cyto 2, plas 1.5, chlo_mito 1.5, golg_plas 1.5

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0098939.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7LI80_MEDTR	259	50.2	68.2	(tr\|G7LI80) Nbs-lrr resistance protein OS=Medicago truncatula GN=MTR_8g018260 PE=4 SV=1
TAIR_pep	AT1G72890.1	193	39.8	63.7	\| Symbols: \| Disease resistance protein (TIR-NBS class) \| chr1:27429947-27431717 FORWARD LENGTH=438
Medicago	Medtr8g018170.1	263	51.7	67.8	\| disease resistance protein (TIR-NBS-LRR class), putative \| LC \| chr8:6146125-6135140 \| 20130731
Soybean	Glyma13g03770.1	256	48.6	70.0
LJGI	gnl\|LJGI\|FS332780	196	82.2	82.2	weakly similar to UniRef100_A7QGF1 Cluster: Chromosome undetermined scaffold_92, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome undetermined scaffold_92, whole genome shotgun sequence - Vitis vinifera (Grape), partial (16%)

IPR000157	Toll/interleukin-1 receptor homology (TIR) domain
Lj0g3v0098939.1				length: 265 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
Biological Process	GO:0007165	signal transduction
HMMPfam	PF01582	TIR	1.8e-33	17-146
HMMSmart	SM00255	Toll	5.2e-45	14-151
ProfileScan	PS50104	TIR	27.853	13-151
superfamily	SSF52200	Toll/Interleukin	9.1e-42	3-154
IPR002182	NB-ARC
Molecular Function	GO:0043531	ADP binding
HMMPfam	PF00931	NB-ARC	2.1e-07	202-249
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	3.4e-06	206-238
no_ID
Gene3D	G3DSA:3.40.50.10140	no description	1e-20	13-144
Gene3D	G3DSA:3.40.50.300	no description	3e-05	201-233
HMMPanther	PTHR11017	LEUCINE-RICH	3.2e-68	1-262
HMMPanther	PTHR11017:SF130DISEASE	RESISTANCE	3.2e-68	1-262