Miyakogusa Predicted Gene

Lj0g3v0097549.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JRG7_MEDTR 738 66.7 78.6 (tr|G7JRG7) IBR domain containing protein OS=Medicago truncatula GN=MTR_4g060940 PE=4 SV=1
TAIR_pep AT5G60250.1 416 48.9 67.9 | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr5:24252226-24254710 FORWARD LENGTH=655
Medicago Medtr2g028870.1 184 30.3 48.5 | C6HC-type zinc finger RING/U-box protein | HC | chr2:10740321-10734195 | 20130731
Soybean Glyma11g15820.1 720 68.9 79.4  
LJGI gnl|LJGI|GO041127 1229 98.9 98.9 similar to UniRef100_A7NZE4 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (35%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0097549.1 length: 524 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 9.539 307-351
IPR002867 Zinc finger, C6HC-type
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF01485 IBR 1.7e-07 376-442
466-510
HMMSmart SM00647 In 0.0078 374-442
455-512
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 0.00025 304-366
IPR017907 Zinc finger, RING-type, conserved site
PatternScan PS00518 ZF_RING_1 NA 325-334
IPR018957 Zinc finger, C3HC4 RING-type
HMMPfam PF00097 zf-C3HC4 3.6e-05 307-351
no_ID  
Coil coil coiled-coil NA 7-28
74-109
HMMPanther PTHR11685 ARIADNE 1.6e-137 94-518
HMMPanther PTHR11685:SF48 SUBFAMILY 1.6e-137 94-518
HMMPfam PF13456 RVT_3 8.4e-11 204-286
Seg seg seg NA 42-58
superfamily SSF57850 RING/U-box 1.1e-06 300-389
451-522
373-447
Wolf-PSORT
Lj0g3v0097549.1	cyto 5, nucl 4, vacu 2, pero 2, cysk_nucl 2, nucl_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0097549.1