Miyakogusa Predicted Gene
- Lj0g3v0097369.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MQH0_SOYBN |
277 |
84.3 |
94.1 |
(tr|I1MQH0) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G17650.1 |
204 |
62.0 |
75.3 |
| Symbols: YSL5, PDE321 | YELLOW STRIPE like 5 | chr3:6034307-6037087 FORWARD LENGTH=714 |
| Medicago |
Medtr6g077870.1 |
266 |
82.4 |
92.2 |
| OPT family oligopeptide transporter | HC | chr6:29250716-29244648 | 20130731 |
| Soybean |
Glyma16g33840.1 |
277 |
84.3 |
94.1 |
|
| LJGI |
gnl|LJGI|GO009180 |
319 |
97.7 |
97.7 |
similar to UniRef100_A7QEM2 Cluster: Chromosome chr17 scaffold_85, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_85, whole genome shotgun sequence - Vitis vinifera (Grape), partial (8%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0097369.1 |
length: 152 aa. |
| IPR004813 |
Oligopeptide transporter, OPT superfamily |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0055085 |
transmembrane transport |
|
|
| HMMPfam |
PF03169 |
OPT |
2.4e-22 |
1-151 |
| no_ID |
|
| HMMPanther |
PTHR31645 |
FAMILY |
9.4e-47 |
1-152 |
| HMMPanther |
PTHR31645:SF0 |
SUBFAMILY |
9.4e-47 |
1-152 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
4 |
26 |
| 53 |
75 |
| 117 |
139 |
- Wolf-PSORT
Lj0g3v0097369.1 plas 4, E.R. 4, E.R._plas 4, extr 2, golg 2, nucl_plas 2, cysk_plas 2, cyto_E.R. 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0097369.1 |
|