Miyakogusa Predicted Gene
- Lj0g3v0096719.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3TAE6_LOTJA |
279 |
91.9 |
91.9 |
(tr|I3TAE6) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT3G12180.1 |
154 |
54.7 |
68.9 |
| Symbols: | Cornichon family protein | chr3:3883464-3884570 FORWARD LENGTH=146 |
| Medicago |
Medtr0311s0030.1 |
219 |
87.7 |
96.5 |
| cornichon family protein | HC | scaffold0311:9983-15900 | 20130731 |
| Soybean |
Glyma10g12190.1 |
256 |
79.9 |
87.9 |
|
| LJGI |
gnl|LJGI|TC64570 |
892 |
100.0 |
100.0 |
similar to UniRef100_A2Q3F1 Cluster: Cornichon; n=1; Medicago truncatula|Rep: Cornichon - Medicago truncatula (Barrel medic), partial (93%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0096719.1 |
length: 149 aa. |
| IPR003377 |
Cornichon |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0016020 |
membrane |
|
|
| Biological Process |
GO:0035556 |
intracellular signal transduction |
|
|
| HMMPfam |
PF03311 |
Cornichon |
3.8e-41 |
1-128 |
| no_ID |
|
| HMMPanther |
PTHR12290 |
CORNICHON-RELATED |
2e-52 |
3-145 |
| HMMPanther |
PTHR12290:SF5 |
CORNICHON-RELATED |
2e-52 |
3-145 |
| Seg |
seg |
seg |
NA |
115-126 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
8 |
30 |
| 55 |
77 |
| 118 |
140 |
- Wolf-PSORT
Lj0g3v0096719.1 extr 5, plas 3, vacu 2, golg 2, E.R._plas 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0096719.1 |
|