Miyakogusa Predicted Gene
- Lj0g3v0094199.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
D7SRQ3_VITVI |
176 |
92.0 |
97.7 |
(tr|D7SRQ3) Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0095g00710 PE=4 SV=1 |
| TAIR_pep |
AT1G31660.1 |
147 |
75.6 |
90.7 |
| Symbols: | CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 475 Blast hits to 467 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). | chr1:11331176-11333440 REVERSE LENGTH=444 |
| Medicago |
Medtr5g025980.1 |
164 |
83.9 |
96.6 |
| bystin, putative | HC | chr5:10641099-10632301 | 20130731 |
| Soybean |
Glyma03g34880.1 |
172 |
92.0 |
96.6 |
|
| LJGI |
gnl|LJGI|TC60142 |
517 |
100.0 |
100.0 |
similar to UniRef100_A7QN53 Cluster: Chromosome undetermined scaffold_130, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_130, whole genome shotgun sequence - Vitis vinifera (Grape), partial (75%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0094199.1 |
length: 98 aa. |
| IPR007955 |
Bystin |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR12821 |
BYSTIN |
7.6e-54 |
1-87 |
| HMMPfam |
PF05291 |
Bystin |
3.2e-44 |
1-87 |
| no_ID |
|
| HMMPanther |
PTHR12821:SF0 |
SUBFAMILY |
7.6e-54 |
1-87 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
73 |
95 |
- Wolf-PSORT
Lj0g3v0094199.1 nucl 4, cyto 2.5, cysk_nucl 2.5, chlo 2, mito 2, plas 2, chlo_mito 2, mito_plas 2, cyto_E.R. 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0094199.1 |
|