Miyakogusa Predicted Gene

Lj0g3v0093109.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LD40_SOYBN 73.9 68.1 85.1 (tr|K7LD40) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT5G08780.1 67.8 57.7 76.9 | Symbols: | winged-helix DNA-binding transcription factor family protein | chr5:2856782-2858810 FORWARD LENGTH=457
Medicago Medtr4g084700.1 79.7 62.3 83.0 | linker histone H1 and h5 family protein | HC | chr4:33010895-33015140 | 20130731
Soybean Glyma17g23750.1 54.7 51.9 69.2  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0093109.2 length: 415 aa.
IPR005818 Histone H1/H5
method AccNumber shortName E-value location
Cellular Component GO:0000786 nucleosome    
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006334 nucleosome assembly    
HMMPfam PF00538 Linker_histone 9.6e-07 1-57
HMMSmart SM00526 Domain 0.0054 1-58
ProfileScan PS51504 H15 18.749 1-64
IPR011991 Winged helix-turn-helix DNA-binding domain
Gene3D G3DSA:1.10.10.10 no description 7.7e-08 1-59
IPR017956 AT hook, DNA-binding motif
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00384 DNA 79 327-339
366-378
394-406
IPR020478 AT hook-like
FPrintScan PR00929 ATHOOK 1.3e-07 327-337
364-375
392-402
no_ID  
Seg seg seg NA 57-92
121-146
164-183
319-335
366-371
superfamily SSF46785 "Winged 1.9e-08 1-73
Wolf-PSORT
Lj0g3v0093109.2	nucl 8, cyto 2, mito 2, chlo 1, extr 1, cyto_mito 1, cyto_pero 1, mito_plas 1, cyto_E.R. 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0093109.2