Miyakogusa Predicted Gene

Lj0g3v0092909.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7MDF5_SOYBN 2262 69.2 78.4 (tr|K7MDF5) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1
TAIR_pep AT2G40030.1 1481 49.4 65.8 | Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | nuclear RNA polymerase D1B | chr2:16715089-16723406 FORWARD LENGTH=1976
Medicago Medtr8g038990.1 2248 69.7 78.5 | DNA-directed RNA polymerase | HC | chr8:14459096-14475944 | 20130731
Soybean Glyma13g26690.1 1936 66.1 76.2  
LJGI gnl|LJGI|TC59796 993 99.2 99.2 weakly similar to UniRef100_A7Q5G0 Cluster: DNA-directed RNA polymerase; n=1; Vitis vinifera|Rep: DNA-directed RNA polymerase - Vitis vinifera (Grape), partial (7%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0092909.1 length: 1584 aa.
IPR000722 RNA polymerase, alpha subunit
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF00623 RNA_pol_Rpb1_2 8.2e-31 326-478
IPR006592 RNA polymerase, N-terminal
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMSmart SM00663 RNA 8.4e-52 208-507
IPR007066 RNA polymerase Rpb1, domain 3
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF04983 RNA_pol_Rpb1_3 3.4e-07 482-627
IPR007080 RNA polymerase Rpb1, domain 1
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF04997 RNA_pol_Rpb1_1 2.3e-09 55-107
IPR007081 RNA polymerase Rpb1, domain 5
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF04998 RNA_pol_Rpb1_5 9.3e-07 756-848
IPR009010 Aspartate decarboxylase-like domain
Gene3D G3DSA:2.40.40.20 no description 1.2e-25 409-481
no_ID  
HMMPanther PTHR19376 DNA-DIRECTED 0 1-995
HMMPanther PTHR19376:SF7 DNA-DIRECTED 0 1-995
Seg seg seg NA 30-44
223-240
488-506
1267-1278
superfamily SSF64484 beta 6.7e-156 2-1236
Wolf-PSORT
Lj0g3v0092909.1	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0092909.1