Miyakogusa Predicted Gene
- Lj0g3v0092249.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1M8D2_SOYBN |
434 |
69.3 |
77.6 |
(tr|I1M8D2) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G19400.2 |
295 |
53.8 |
68.1 |
| Symbols: | Erythronate-4-phosphate dehydrogenase family protein | chr1:6712222-6713676 REVERSE LENGTH=303 |
| Medicago |
Medtr1g022190.4 |
373 |
63.2 |
74.9 |
| erythronate-4-phosphate dehydrogenase family protein | HC | chr1:6938459-6934779 | 20130731 |
| Soybean |
Glyma14g08170.4 |
434 |
69.3 |
77.6 |
|
| LJGI |
gnl|LJGI|TC77873 |
52.0 |
88.0 |
88.0 |
similar to UniRef100_A7P916 Cluster: Chromosome chr3 scaffold_8, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_8, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0092249.1 |
length: 316 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR10996 |
2-HYDROXYACID |
2.5e-15 |
33-120 |
| HMMPanther |
PTHR10996:SF1 |
2-HYDROXYACID |
2.5e-15 |
33-120 |
| Seg |
seg |
seg |
NA |
278-297 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
281 |
303 |
- Wolf-PSORT
Lj0g3v0092249.1 cyto 6.5, cyto_nucl 5.5, nucl 3.5, chlo 1, extr 1, vacu 1, E.R. 1, E.R._vacu 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0092249.1 |
|