Miyakogusa Predicted Gene

Lj0g3v0089779.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LXQ3_SOYBN 1345 64.4 73.7 (tr|I1LXQ3) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT5G01630.1 852 46.5 63.1 | Symbols: BRCA2B, BRCA2(V), ATBRCA2(V) | BRCA2-like B | chr5:235117-240911 REVERSE LENGTH=1155
Medicago Medtr3g083250.1 1377 70.0 79.1 | breast cancer type 2 susceptibility protein | HC | chr3:37568957-37576662 | 20130731
Soybean Glyma13g11750.1 1347 64.7 74.1  
LJGI gnl|LJGI|BP054614 765 100.0 100.0 weakly similar to UniRef100_A7QFE8 Cluster: Chromosome chr8 scaffold_88, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_88, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0089779.1 length: 1065 aa.
IPR002093 BRCA2 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Biological Process GO:0006302 double-strand break repair    
HMMPfam PF00634 BRCA2 5.1e-07 180-211
ProfileScan PS50138 BRCA2_REPEAT 9.485 178-212
IPR012340 Nucleic acid-binding, OB-fold
Gene3D G3DSA:2.40.50.140 no description 2e-11 541-668
817-893
superfamily SSF50249 Nucleic 8.3e-14 541-673
673-904
906-1065
IPR015187 BRCA2, oligonucleotide/oligosaccharide-binding 1
Biological Process GO:0000724 double-strand break repair via homologous recombination    
HMMPfam PF09103 BRCA-2_OB1 3.7e-42 542-669
IPR015252 DNA recombination/repair protein BRCA2, helical domain
Biological Process GO:0000724 double-strand break repair via homologous recombination    
Molecular Function GO:0003697 single-stranded DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006310 DNA recombination    
Biological Process GO:0007090 regulation of S phase of mitotic cell cycle    
HMMPfam PF09169 BRCA-2_helical 3.5e-16 458-537
superfamily SSF81872 BRCA2 8.5e-39 352-540
IPR015525 Breast cancer type 2 susceptibility protein
HMMPanther PTHR11289 BREAST 7.5e-183 414-1063
no_ID  
HMMPanther PTHR11289:SF0 SUBFAMILY 7.5e-183 414-1063
Seg seg seg NA 27-49
126-137
205-228
superfamily SSF81878 BRCA2 1.4e-20 702-820
Wolf-PSORT
Lj0g3v0089779.1	nucl 12, cyto 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0089779.1