Miyakogusa Predicted Gene

Lj0g3v0089069.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL D7SNQ6_VITVI 462 66.7 80.1 (tr|D7SNQ6) Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0029g00490 PE=4 SV=1
TAIR_pep AT1G03510.1 429 60.8 74.0 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:876258-877547 REVERSE LENGTH=429
Medicago Medtr2g061460.1 491 69.1 83.2 | pentatricopeptide (PPR) repeat protein | HC | chr2:26047948-26049264 | 20130731
Soybean Glyma15g40620.1 214 36.5 55.7  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0089069.1 length: 342 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.77 226-249
HMMPfam PF13041 PPR_2 9.5e-10 251-299
HMMTigr TIGR00756 PPR: 4.9e-07 254-287
ProfileScan PS51375 PPR 5.963 13-47
148-183
115-146
84-114
252-286
219-249
287-317
323-342
no_ID  
HMMPanther PTHR24015 FAMILY 7.2e-147 13-342
HMMPanther PTHR24015:SF17 SUBFAMILY 7.2e-147 13-342
Putative transmembrane regions
  From To
TM segments
SOSUI		 184 206
247 269
Wolf-PSORT
Lj0g3v0089069.1	chlo 6, mito 3, vacu 2, E.R. 2, E.R._vacu 2, mito_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0089069.1