Miyakogusa Predicted Gene

Lj0g3v0088939.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
TrEMBL I1MPC1_SOYBN 1673 75.5 85.1 (tr|I1MPC1) Uncharacterized protein OS=Glycine max PE=3 SV=2
TAIR_pep AT3G59140.1 1445 65.4 78.7 | Symbols: ATMRP14, MRP14, ABCC10 | multidrug resistance-associated protein 14 | chr3:21863519-21868701 REVERSE LENGTH=1453
Medicago Medtr6g034335.1 1716 76.5 85.6 | ABC transporter family protein | HC | chr6:11741394-11734594 | 20130731
Soybean Glyma20g30490.1 1669 75.1 85.7  
LJGI gnl|LJGI|GO023806 266 89.6 89.6 similar to UniRef100_A7QTS7 Cluster: Chromosome undetermined scaffold_171, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_171, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0088939.1 length: 1069 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 2.5e-23 1-198
547-810
IPR003439 ABC transporter-like
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 8e-19 292-402
900-1023
ProfileScan PS50893 ABC_TRANSPORTER_2 12.258 251-473
859-1069
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 1.8e-09 277-450
885-1068
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 ABC 8.8e-20 518-849
1-242
IPR017871 ABC transporter, conserved site
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
PatternScan PS00211 ABC_TRANSPORTER_1 NA 375-389
IPR017940 ABC transporter, integral membrane type 1
ProfileScan PS50929 ABC_TM1F 25.975 1-214
559-822
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 6.3e-49 838-1069
228-459
no_ID  
Gene3D G3DSA:1.20.1560.10 no description 2.7e-48 3-232
545-837
Gene3D G3DSA:3.40.50.300 no description 4.9e-56 253-480
859-1069
HMMPanther PTHR24223 FAMILY 0 1-1069
HMMPanther PTHR24223:SF107SUBFAMILY NOT 0 1-1069
Seg seg seg NA 72-86
637-656
Putative transmembrane regions
  From To
TM segments
SOSUI
63 85
158 180
195 217
541 563
581 603
640 662
671 693
776 798
Wolf-PSORT
Lj0g3v0088939.1	chlo 5, plas 5, nucl 2, cyto 1, cysk 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0088939.1