Miyakogusa Predicted Gene

Lj0g3v0088629.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IPE1_MEDTR 783 87.9 92.9 (tr|G7IPE1) Serine hydroxymethyltransferase OS=Medicago truncatula GN=MTR_2g006570 PE=3 SV=1
TAIR_pep AT1G22020.1 667 74.2 86.5 | Symbols: SHM6 | serine hydroxymethyltransferase 6 | chr1:7754599-7757087 FORWARD LENGTH=599
Medicago Medtr2g006570.1 783 87.9 92.9 | serine hydroxymethyltransferase | HC | chr2:605414-610991 | 20130731
Soybean Glyma08g20050.3 777 87.7 92.7  
LJGI gnl|LJGI|TC64005 458 100.0 100.0 similar to UniRef100_A9PL07 Cluster: Serine hydroxymethyltransferase; n=1; Populus tremuloides|Rep: Serine hydroxymethyltransferase - Populus tremuloides (Quaking aspen), partial (13%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0088629.1 length: 419 aa.
IPR001085 Serine hydroxymethyltransferase
method AccNumber shortName E-value location
Molecular Function GO:0004372 glycine hydroxymethyltransferase activity    
Biological Process GO:0006544 glycine metabolic process    
Biological Process GO:0006563 L-serine metabolic process    
HMMPIR PIRSF000412 Serine/glycine 9.3e-193 1-418
HMMPanther PTHR11680 SERINE 4.9e-252 1-419
HMMPfam PF00464 SHMT 1.5e-153 1-370
IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.40.640.10 no description 2.3e-89 1-269
IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.90.1150.10 no description 1.6e-49 270-418
IPR015424 Pyridoxal phosphate-dependent transferase
superfamily SSF53383 PLP-dependent 5.4e-146 1-419
IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site
Molecular Function GO:0004372 glycine hydroxymethyltransferase activity    
Biological Process GO:0006544 glycine metabolic process    
Biological Process GO:0006563 L-serine metabolic process    
Molecular Function GO:0030170 pyridoxal phosphate binding    
PatternScan PS00096 SHMT NA 189-205
no_ID  
HMMPanther PTHR11680:SF0 SUBFAMILY 4.9e-252 1-419
Seg seg seg NA 303-315
Wolf-PSORT
Lj0g3v0088629.1	nucl 7, cyto 5, chlo 1, mito 1, chlo_mito 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0088629.1