Miyakogusa Predicted Gene

Lj0g3v0088109.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IZN3_MEDTR 726 68.1 82.5 (tr|G7IZN3) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_3g034990 PE=4 SV=1
TAIR_pep AT1G62670.1 404 37.5 60.1 | Symbols: RPF2 | rna processing factor 2 | chr1:23204773-23206665 REVERSE LENGTH=630
Medicago Medtr3g034990.2 730 68.7 82.7 | pentatricopeptide (PPR) repeat protein | LC | chr3:11989869-11995030 | 20130731
Soybean Glyma09g30530.1 705 65.0 82.4  
LJGI gnl|LJGI|FS333759 1257 99.8 99.8 weakly similar to UniRef100_A7Q622 Cluster: Chromosome chr14 scaffold_54, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_54, whole genome shotgun sequence - Vitis vinifera (Grape), partial (21%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0088109.1 length: 551 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF12854 PPR_1 1.3e-09 161-191
198-229
441-471
HMMPfam PF13041 PPR_2 8.3e-14 96-143
235-284
306-354
375-424
484-527
HMMTigr TIGR00756 PPR: 1.3e-10 98-132
133-166
168-194
203-237
238-272
273-305
308-342
344-377
378-407
413-447
449-480
484-517
ProfileScan PS51375 PPR 9.098 96-130
61-95
131-165
166-200
201-235
236-270
271-305
306-340
341-375
376-410
411-445
446-480
481-515
516-550
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 8.6e-07 408-505
no_ID  
HMMPanther PTHR24015 FAMILY 2.8e-169 42-548
HMMPanther PTHR24015:SF0 SUBFAMILY 2.8e-169 42-548
Seg seg seg NA 24-35
superfamily SSF48452 TPR-like 0.0074 376-475
236-335
Wolf-PSORT
Lj0g3v0088109.1	mito 4, chlo_mito 3.83333, cyto_mito 2.83333, chlo 2.5, nucl 2, cyto 2, cyto_nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0088109.1