Miyakogusa Predicted Gene
- Lj0g3v0086889.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7JS95_MEDTR |
194 |
49.6 |
64.7 |
(tr|G7JS95) F-box/LRR-repeat protein OS=Medicago truncatula GN=MTR_4g019320 PE=4 SV=1 |
| TAIR_pep |
AT1G80630.1 |
119 |
36.0 |
52.3 |
| Symbols: | RNI-like superfamily protein | chr1:30308879-30310615 REVERSE LENGTH=578 |
| Medicago |
Medtr4g019320.1 |
194 |
49.6 |
64.7 |
| F-box/LRR protein | HC | chr4:6007909-6006085 | 20130731 |
| Soybean |
Glyma07g02970.1 |
184 |
50.7 |
64.1 |
|
| LJGI |
gnl|LJGI|FS322002 |
420 |
89.0 |
89.0 |
weakly similar to UniRef100_A9U3I4 Cluster: Predicted protein; n=1; Physcomitrella patens subsp. patens|Rep: Predicted protein - Physcomitrella patens subsp. patens, partial (14%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0086889.1 |
length: 217 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
0.00066 |
7-44 |
| no_ID |
|
| Gene3D |
G3DSA:3.80.10.10 |
no description |
4.2e-19 |
6-211 |
| HMMPanther |
PTHR23125 |
F-BOX/LEUCINE |
7.1e-15 |
7-215 |
| HMMPanther |
PTHR23125:SF58 |
SUBFAMILY |
7.1e-15 |
7-215 |
| Seg |
seg |
seg |
NA |
51-64 |
| superfamily |
SSF52047 |
RNI-like |
7.5e-13 |
52-216 |
- Wolf-PSORT
Lj0g3v0086889.1 cyto 7, nucl 3, cysk 2, extr 1, golg 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0086889.1 |
|