Miyakogusa Predicted Gene
- Lj0g3v0085339.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G8DCY2_PHAVU |
123 |
58.1 |
75.3 |
(tr|G8DCY2) Putative retrovirus-like polyprotein OS=Phaseolus vulgaris PE=3 SV=1 |
| TAIR_pep |
AT1G21280.1 |
67.4 |
29.6 |
51.1 |
| Symbols: | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7447690-7448403 REVERSE LENGTH=237 |
| Medicago |
Medtr6g072160.1 |
57.4 |
44.2 |
65.4 |
| hypothetical protein | LC | chr6:28019617-28020512 | 20130731 |
| Soybean |
Glyma20g39450.2 |
121 |
55.8 |
75.8 |
|
| LJGI |
gnl|LJGI|TC78686 |
565 |
97.5 |
97.5 |
similar to UniRef100_Q2HT49 Cluster: Integrase, catalytic region; n=1; Medicago truncatula|Rep: Integrase, catalytic region - Medicago truncatula (Barrel medic), partial (4%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0085339.1 |
length: 210 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF14244 |
UBN2_3 |
1.1e-16 |
1-89 |
| Seg |
seg |
seg |
NA |
151-157 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
1 |
23 |
| 153 |
175 |
- Wolf-PSORT
Lj0g3v0085339.1 vacu 6, chlo 2, extr 2, nucl 1, plas 1, E.R. 1, golg 1, chlo_mito 1, nucl_plas 1, golg_plas 1, E.R._plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0085339.1 |
|