Miyakogusa Predicted Gene
- Lj0g3v0084719.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7LX49_SOYBN |
1997 |
73.4 |
83.8 |
(tr|K7LX49) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G77600.2 |
999 |
47.6 |
67.3 |
| Symbols: | ARM repeat superfamily protein | chr1:29152890-29162156 REVERSE LENGTH=1410 |
| Medicago |
Medtr1g037280.3 |
1162 |
74.2 |
84.4 |
| sister chromatid cohesion PDS5-like protein | HC | chr1:13708489-13733416 | 20130731 |
| Soybean |
Glyma13g03220.1 |
885 |
69.1 |
78.7 |
|
| LJGI |
gnl|LJGI|DC592929 |
1096 |
100.0 |
100.0 |
weakly similar to UniRef100_A7NVC8 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (11%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0084719.1 |
length: 1365 aa. |
| IPR011989 |
Armadillo-like helical |
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:1.25.10.10 |
no description |
9.9e-15 |
822-852 |
| IPR016024 |
Armadillo-type fold |
| Molecular Function |
GO:0005488 |
binding |
|
|
| superfamily |
SSF48371 |
ARM |
1.7e-21 |
251-949 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
498-526 |
| HMMPanther |
PTHR12663 |
ANDROGEN |
6.4e-193 |
6-1098 |
| HMMPanther |
PTHR12663:SF0 |
SUBFAMILY |
6.4e-193 |
6-1098 |
- Wolf-PSORT
Lj0g3v0084719.1 plas 9, nucl 2, mito 1, vacu 1, E.R. 1, cyto_nucl 1, cysk_nucl 1, E.R._vacu 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0084719.1 |
|