Miyakogusa Predicted Gene

Lj0g3v0084329.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7L256_SOYBN 694 82.4 89.0 (tr|K7L256) Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1

TAIR_pep AT2G01440.1 568 68.0 81.2 | Symbols: | DEAD/DEAH box RNA helicase family protein | chr2:193950-199056 REVERSE LENGTH=973

Medicago Medtr1g031140.1 693 82.4 89.8 | ATP-dependent DNA helicase RecG | HC | chr1:10876622-10858818 | 20130731

Soybean Glyma07g21670.1 379 82.8 89.1

LJGI gnl|LJGI|TC61101 926 99.8 99.8 similar to UniRef100_Q6ZFX9 Cluster: ATP-dependent DNA helicase RECG-like; n=1; Oryza sativa Japonica Group|Rep: ATP-dependent DNA helicase RECG-like - Oryza sativa subsp. japonica (Rice), partial (44%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0084329.1 length: 410 aa.

IPR001650 Helicase, C-terminal

method AccNumber shortName E-value location

Molecular Function GO:0003676 nucleic acid binding

Molecular Function GO:0004386 helicase activity

Molecular Function GO:0005524 ATP binding

HMMPfam PF00271 Helicase_C 7.8e-17 231-304

HMMSmart SM00490 helicase 1.8e-19 208-305

ProfileScan PS51194 HELICASE_CTER 15.359 186-341

IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal

Molecular Function GO:0003676 nucleic acid binding

Molecular Function GO:0005524 ATP binding

Molecular Function GO:0008026 ATP-dependent helicase activity

HMMPfam PF00270 DEAD 4e-10 9-148

IPR014001 Helicase, superfamily 1/2, ATP-binding domain

ProfileScan PS51192 HELICASE_ATP_BIND_1 15.413 1-162

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 1.9e-49 6-328

no_ID

Gene3D G3DSA:3.40.50.300 no description 1.4e-37 2-169
172-350

HMMPanther PTHR24031 FAMILY 2.8e-189 1-402

HMMPanther PTHR24031:SF51 SUBFAMILY 2.8e-189 1-402

Seg seg seg NA 23-34
339-350

Wolf-PSORT

Lj0g3v0084329.1 cyto 11.5, cyto_E.R. 6.5, chlo 1, nucl 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0084329.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7L256_SOYBN	694	82.4	89.0	(tr\|K7L256) Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1
TAIR_pep	AT2G01440.1	568	68.0	81.2	\| Symbols: \| DEAD/DEAH box RNA helicase family protein \| chr2:193950-199056 REVERSE LENGTH=973
Medicago	Medtr1g031140.1	693	82.4	89.8	\| ATP-dependent DNA helicase RecG \| HC \| chr1:10876622-10858818 \| 20130731
Soybean	Glyma07g21670.1	379	82.8	89.1
LJGI	gnl\|LJGI\|TC61101	926	99.8	99.8	similar to UniRef100_Q6ZFX9 Cluster: ATP-dependent DNA helicase RECG-like; n=1; Oryza sativa Japonica Group\|Rep: ATP-dependent DNA helicase RECG-like - Oryza sativa subsp. japonica (Rice), partial (44%)

IPR001650	Helicase, C-terminal
Lj0g3v0084329.1				length: 410 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003676	nucleic acid binding
Molecular Function	GO:0004386	helicase activity
Molecular Function	GO:0005524	ATP binding
HMMPfam	PF00271	Helicase_C	7.8e-17	231-304
HMMSmart	SM00490	helicase	1.8e-19	208-305
ProfileScan	PS51194	HELICASE_CTER	15.359	186-341
IPR011545	DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function	GO:0003676	nucleic acid binding
Molecular Function	GO:0005524	ATP binding
Molecular Function	GO:0008026	ATP-dependent helicase activity
HMMPfam	PF00270	DEAD	4e-10	9-148
IPR014001	Helicase, superfamily 1/2, ATP-binding domain
ProfileScan	PS51192	HELICASE_ATP_BIND_1	15.413	1-162
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	1.9e-49	6-328
no_ID
Gene3D	G3DSA:3.40.50.300	no description	1.4e-37	2-169 172-350
HMMPanther	PTHR24031	FAMILY	2.8e-189	1-402
HMMPanther	PTHR24031:SF51	SUBFAMILY	2.8e-189	1-402
Seg	seg	seg	NA	23-34 339-350