Miyakogusa Predicted Gene

Lj0g3v0084279.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1KKR6_SOYBN 306 62.1 74.2 (tr|I1KKR6) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT2G43630.1 156 35.5 52.3 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, nucleus, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G59640.2); Has 67 Blast hits to 67 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 1; Plants - 49; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:18096255-18097344 FORWARD LENGTH=274

Medicago Medtr1g030860.4 183 41.4 58.6 | hypothetical protein | HC | chr1:10802509-10797249 | 20130731

Soybean Glyma07g22950.1 306 62.1 74.2

LJGI gnl|LJGI|TC71183 1166 100.0 100.0 similar to UniRef100_A7QAR0 Cluster: Chromosome chr5 scaffold_72, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_72, whole genome shotgun sequence - Vitis vinifera (Grape), partial (16%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0084279.1 length: 260 aa.

no_ID

method AccNumber shortName E-value location

Seg seg seg NA 115-147
252-260

Putative transmembrane regions

From To

TM segments
SOSUI 154 176

Wolf-PSORT

Lj0g3v0084279.1 chlo 11, vacu 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0084279.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1KKR6_SOYBN	306	62.1	74.2	(tr\|I1KKR6) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT2G43630.1	156	35.5	52.3	\| Symbols: \| FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, nucleus, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G59640.2); Has 67 Blast hits to 67 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 1; Plants - 49; Viruses - 2; Other Eukaryotes - 2 (source: NCBI BLink). \| chr2:18096255-18097344 FORWARD LENGTH=274
Medicago	Medtr1g030860.4	183	41.4	58.6	\| hypothetical protein \| HC \| chr1:10802509-10797249 \| 20130731
Soybean	Glyma07g22950.1	306	62.1	74.2
LJGI	gnl\|LJGI\|TC71183	1166	100.0	100.0	similar to UniRef100_A7QAR0 Cluster: Chromosome chr5 scaffold_72, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr5 scaffold_72, whole genome shotgun sequence - Vitis vinifera (Grape), partial (16%)

no_ID
Lj0g3v0084279.1				length: 260 aa.
method	AccNumber	shortName	E-value	location
Seg	seg	seg	NA	115-147 252-260