Miyakogusa Predicted Gene

Lj0g3v0080839.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL C6T193_SOYBN 202 100.0 100.0 (tr|C6T193) Putative uncharacterized protein OS=Glycine max PE=2 SV=1
TAIR_pep AT5G39850.1 190 91.8 98.0 | Symbols: | Ribosomal protein S4 | chr5:15950053-15951171 FORWARD LENGTH=197
Medicago Medtr7g067490.1 191 95.9 97.9 | 40S ribosomal S9-like protein | HC | chr7:24652242-24653030 | 20130731
Soybean Glyma17g10710.1 201 100.0 100.0  
LJGI gnl|LJGI|TC64838 696 100.0 100.0 homologue to UniRef100_A7PMS9 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0080839.1 length: 116 aa.
IPR002942 RNA-binding S4 domain
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
Gene3D G3DSA:3.10.290.10 no description 2.1e-14 27-74
HMMPfam PF01479 S4 1.7e-14 28-72
HMMSmart SM00363 S4 3.1e-05 28-99
ProfileScan PS50889 S4 10.997 28-99
IPR005710 Ribosomal protein S4/S9, eukaryotic/archaeal
Molecular Function GO:0003735 structural constituent of ribosome    
Biological Process GO:0006412 translation    
Cellular Component GO:0015935 small ribosomal subunit    
HMMTigr TIGR01018 rpsD_arch: 7.4e-37 2-85
IPR018079 Ribosomal protein S4, conserved site
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0019843 rRNA binding    
PatternScan PS00632 RIBOSOMAL_S4 NA 26-50
IPR022801 Ribosomal protein S4/S9
HMMPanther PTHR11831 30S 1e-71 1-116
no_ID  
HMMPanther PTHR11831:SF3 40S 1e-71 1-116
Seg seg seg NA 99-105
107-116
superfamily SSF55174 Alpha-L 4.9e-18 9-81
Wolf-PSORT
Lj0g3v0080839.1	cyto 10, chlo 2, mito 1, golg 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0080839.1