Miyakogusa Predicted Gene
- Lj0g3v0079869.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
C3VIX9_VITVI |
264 |
42.6 |
60.5 |
(tr|C3VIX9) Rd22-c OS=Vitis vinifera GN=VIT_04s0008g03950 PE=2 SV=1 |
| TAIR_pep |
AT5G25610.1 |
196 |
46.6 |
65.0 |
| Symbols: RD22, ATRD22 | BURP domain-containing protein | chr5:8914498-8916684 REVERSE LENGTH=392 |
| Medicago |
Medtr1g008470.1 |
250 |
45.4 |
61.2 |
| dehydration-responsive protein RD22 | HC | chr1:923318-924651 | 20130731 |
| Soybean |
Glyma06g08540.1 |
253 |
42.5 |
57.7 |
|
| LJGI |
gnl|LJGI|TC82223 |
1869 |
99.8 |
99.8 |
weakly similar to UniRef100_Q6DUZ0 Cluster: Dehydration-induced protein RD22-like protein 2; n=1; Gossypium arboreum|Rep: Dehydration-induced protein RD22-like protein 2 - Gossypium arboreum (Tree cotton), partial (34%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0079869.1 |
length: 315 aa. |
| IPR004873 |
BURP domain |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF03181 |
BURP |
4.4e-72 |
101-315 |
| HMMSmart |
SM01045 |
no description |
1.5e-62 |
100-315 |
| ProfileScan |
PS51277 |
BURP |
69.869 |
102-315 |
| no_ID |
|
| HMMPanther |
PTHR31236 |
FAMILY |
4.3e-40 |
92-315 |
| HMMPanther |
PTHR31236:SF0 |
SUBFAMILY |
4.3e-40 |
92-315 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
1 |
23 |
- Wolf-PSORT
Lj0g3v0079869.1 extr 4, vacu 4, golg 2, cyto 1, mito 1, plas 1, E.R. 1, E.R._plas 1, mito_plas 1, cyto_E.R. 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0079869.1 |
|