Miyakogusa Predicted Gene
- Lj0g3v0078809.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7LZQ2_SOYBN |
174 |
70.1 |
82.1 |
(tr|K7LZQ2) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G33410.2 |
86.7 |
35.1 |
64.0 |
| Symbols: SAR1 | SUPPRESSOR OF AUXIN RESISTANCE1 | chr1:12109769-12118828 REVERSE LENGTH=1504 |
| Medicago |
Medtr1g063180.2 |
168 |
71.6 |
79.3 |
| suppressor of auxin resistance 1 protein | HC | chr1:27819581-27840479 | 20130731 |
| Soybean |
Glyma13g20540.1 |
168 |
66.1 |
77.4 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0078809.1 |
length: 139 aa. |
| IPR021717 |
Nucleoporin Nup120/160 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF11715 |
Nup160 |
5.7e-07 |
2-38 |
| no_ID |
|
| Seg |
seg |
seg |
NA |
129-139 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
113 |
135 |
- Wolf-PSORT
Lj0g3v0078809.1 cyto 7, nucl 2, golg 2, chlo 1, mito 1, E.R. 1, chlo_mito 1, cysk_nucl 1, nucl_plas 1, golg_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0078809.1 |
|