| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | I1LFV1_SOYBN | 1202 | 81.9 | 88.4 | (tr|I1LFV1) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep | AT3G22690.2 | 802 | 55.7 | 72.6 | | Symbols: | INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1). | chr3:8022006-8024534 REVERSE LENGTH=842 |
| Medicago | Medtr5g006570.1 | 1102 | 76.2 | 85.5 | | pentatricopeptide (PPR) repeat protein | HC | chr5:988953-991582 | 20130731 |
| Soybean | Glyma11g00940.1 | 1204 | 81.9 | 88.4 | |
| LJGI | gnl|LJGI|GO023325 | 149 | 94.7 | 94.7 |
| Lj0g3v0078579.1 | length: 712 aa. | |||
| IPR002885 | Pentatricopeptide repeat | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| HMMPfam | PF01535 | PPR | 0.00014 | 93-118 599-625 |
| HMMPfam | PF13041 | PPR_2 | 2.2e-08 | 192-240 292-340 393-425 425-463 526-573 |
| HMMPfam | PF13812 | PPR_3 | 0.012 | 368-391 |
| HMMTigr | TIGR00756 | PPR: | 0.00052 | 93-126 194-227 295-328 396-427 427-457 529-561 600-624 |
| ProfileScan | PS51375 | PPR | 6.160 | 90-125 126-160 192-226 161-191 227-261 293-327 262-292 394-428 363-393 328-362 429-459 526-560 495-525 460-494 561-591 597-627 663-697 |
| IPR011990 | Tetratricopeptide-like helical | |||
| Molecular Function | GO:0005515 | protein binding | ||
| Gene3D | G3DSA:1.25.40.10 | no description | 1.7e-06 | 636-682 |
| no_ID | ||||
| HMMPanther | PTHR24015 | FAMILY | 5e-234 | 71-712 |
| HMMPanther | PTHR24015:SF61 | PGR3 | 5e-234 | 71-712 |
| Seg | seg | seg | NA | 606-620 |
| superfamily | SSF48452 | TPR-like | 0.0034 | 522-680 |
| superfamily | SSF81901 | HCP-like | 0.0049 | 403-534 201-307 |
Lj0g3v0078579.1 chlo 3, E.R. 3, nucl 2.5, extr 2, chlo_mito 2, cysk_nucl 2, E.R._vacu 2, cyto_E.R. 2
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj0g3v0078579.1 |