Miyakogusa Predicted Gene
- Lj0g3v0078459.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1JB95_SOYBN |
397 |
83.5 |
91.8 |
(tr|I1JB95) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G05910.2 |
333 |
65.6 |
80.3 |
| Symbols: | Pectinacetylesterase family protein | chr3:1764389-1767240 REVERSE LENGTH=311 |
| Medicago |
Medtr1g085620.1 |
373 |
81.0 |
87.2 |
| pectinacetylesterase family protein | HC | chr1:38256442-38260285 | 20130731 |
| Soybean |
Glyma02g00930.1 |
397 |
83.5 |
91.8 |
|
| LJGI |
gnl|LJGI|TC61494 |
1427 |
100.0 |
100.0 |
similar to UniRef100_A7PRH0 Cluster: Chromosome chr14 scaffold_27, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_27, whole genome shotgun sequence - Vitis vinifera (Grape), partial (72%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0078459.1 |
length: 240 aa. |
| IPR004963 |
Pectinacetylesterase |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR21562 |
NOTUM-RELATED |
1.9e-145 |
1-240 |
| HMMPfam |
PF03283 |
PAE |
5.5e-97 |
42-239 |
| no_ID |
|
| HMMPanther |
PTHR21562:SF1 |
PECTIN |
1.9e-145 |
1-240 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
1 |
23 |
- Wolf-PSORT
Lj0g3v0078459.1 chlo 4, vacu 4, extr 3, nucl 1, cyto 1, plas 1, cyto_nucl 1, nucl_plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0078459.1 |
Not targeted |
-19.571 |
0 |
-2.427 |
12.38% |
-17.144
|