Miyakogusa Predicted Gene
- Lj0g3v0077939.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1KFL1_SOYBN |
116 |
90.0 |
95.0 |
(tr|I1KFL1) Uncharacterized protein OS=Glycine max PE=3 SV=2 |
| TAIR_pep |
AT1G30400.2 |
108 |
74.2 |
93.5 |
| Symbols: ATMRP1, EST1, ABCC1 | multidrug resistance-associated protein 1 | chr1:10728139-10737697 FORWARD LENGTH=1622 |
| Medicago |
Medtr3g011820.1 |
114 |
86.7 |
95.0 |
| multidrug resistance protein ABC transporter family protein | HC | chr3:3016723-3005103 | 20130731 |
| Soybean |
Glyma06g46940.1 |
116 |
90.0 |
95.0 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0077939.1 |
length: 72 aa. |
| IPR001140 |
ABC transporter, transmembrane domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| Biological Process |
GO:0006810 |
transport |
|
|
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| Molecular Function |
GO:0042626 |
ATPase activity, coupled to transmembrane movement of substances |
|
|
| Biological Process |
GO:0055085 |
transmembrane transport |
|
|
| HMMPfam |
PF00664 |
ABC_membrane |
2.4e-09 |
2-58 |
| IPR017940 |
ABC transporter, integral membrane type 1 |
| ProfileScan |
PS50929 |
ABC_TM1F |
9.980 |
1-59 |
| no_ID |
|
| HMMPanther |
PTHR24223 |
FAMILY |
8e-36 |
2-61 |
| HMMPanther |
PTHR24223:SF110PREDICTED: |
SIMILAR |
8e-36 |
2-61 |
- Wolf-PSORT
Lj0g3v0077939.1 nucl 5.5, cyto_nucl 5.5, chlo 4, cyto 2.5, extr 1, pero 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0077939.1 |
|