Miyakogusa Predicted Gene

Lj0g3v0077169.3
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7K1E2_SOYBN 1134 71.0 78.3 (tr|K7K1E2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G65450.1 520 54.4 66.3 | Symbols: UBP17 | ubiquitin-specific protease 17 | chr5:26157863-26161096 FORWARD LENGTH=731
Medicago Medtr5g032380.1 1130 70.4 77.7 | ubiquitin carboxy-terminal hydrolase | HC | chr5:13903707-13894717 | 20130731
Soybean Glyma01g02940.1 870 73.4 78.2  
LJGI gnl|LJGI|FS325503 599 100.0 100.0 similar to UniRef100_A7R0I9 Cluster: Chromosome undetermined scaffold_310, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_310, whole genome shotgun sequence - Vitis vinifera (Grape), partial (5%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0077169.3 length: 868 aa.
IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
method AccNumber shortName E-value location
Molecular Function GO:0004221 ubiquitin thiolesterase activity    
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
HMMPfam PF00443 UCH 8.2e-48 398-699
ProfileScan PS50235 UCH_2_3 27.281 399-703
IPR002893 Zinc finger, MYND-type
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF01753 zf-MYND 8e-10 64-101
ProfileScan PS50865 ZF_MYND_2 11.810 64-101
IPR018200 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site
Molecular Function GO:0004221 ubiquitin thiolesterase activity    
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
PatternScan PS00972 UCH_2_1 NA 400-415
no_ID  
Gene3D G3DSA:2.20.210.10 no description 7.6e-09 523-595
HMMPanther PTHR24006 FAMILY 3.7e-155 81-766
HMMPanther PTHR24006:SF85 SUBFAMILY 3.7e-155 81-766
Seg seg seg NA 2-21
31-46
49-58
209-219
297-311
746-758
786-805
834-847
858-868
superfamily SSF144232 HIT/MYND 2.3e-12 54-101
superfamily SSF54001 Cysteine 1.3e-83 393-735
Putative transmembrane regions
  From To
TM segments
SOSUI		 1 22
Wolf-PSORT
Lj0g3v0077169.3	nucl 10, E.R. 2, mito 1, plas 1, E.R._vacu 1, mito_plas 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0077169.3