Miyakogusa Predicted Gene
- Lj0g3v0076849.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7LFI2_MEDTR |
319 |
48.3 |
63.1 |
(tr|G7LFI2) F-box protein OS=Medicago truncatula GN=MTR_8g063440 PE=4 SV=1 |
| TAIR_pep |
AT2G40925.1 |
81.3 |
24.2 |
39.7 |
| Symbols: | F-box and associated interaction domains-containing protein | chr2:17074905-17076116 REVERSE LENGTH=403 |
| Medicago |
Medtr8g063440.1 |
319 |
48.3 |
63.1 |
| F-box protein interaction domain protein | HC | chr8:26606178-26607478 | 20130731 |
| Soybean |
Glyma03g35240.1 |
164 |
43.5 |
56.0 |
|
| LJGI |
gnl|LJGI|GO010439 |
107 |
85.6 |
85.6 |
similar to UniRef100_A2Q609 Cluster: Cyclin-like F-box; F-box protein interaction domain; n=1; Medicago truncatula|Rep: Cyclin-like F-box; F-box protein interaction domain - Medicago truncatula (Barrel medic), partial (18%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0076849.1 |
length: 393 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMSmart |
SM00256 |
A |
0.00024 |
15-55 |
| superfamily |
SSF81383 |
F-box |
5.5e-07 |
2-118 |
| IPR006527 |
F-box associated domain, type 1 |
| HMMPfam |
PF07734 |
FBA_1 |
7.1e-06 |
241-359 |
| IPR017451 |
F-box associated interaction domain |
| HMMTigr |
TIGR01640 |
F_box_assoc_1: |
2.2e-25 |
125-346 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
0.00023 |
14-51 |
| Seg |
seg |
seg |
NA |
149-161 |
- Wolf-PSORT
Lj0g3v0076849.1 cyto 9, nucl 2, mito 1, pero 1, golg 1, cysk_nucl 1, nucl_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0076849.1 |
|