Miyakogusa Predicted Gene
- Lj0g3v0076589.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7JZR2_MEDTR |
162 |
36.3 |
47.9 |
(tr|G7JZR2) F-box/LRR-repeat protein OS=Medicago truncatula GN=MTR_5g073420 PE=4 SV=1 |
| TAIR_pep |
AT4G10400.2 |
97.4 |
34.0 |
46.8 |
| Symbols: | F-box/RNI-like/FBD-like domains-containing protein | chr4:6446335-6447715 REVERSE LENGTH=409 |
| Medicago |
Medtr5g073420.1 |
162 |
36.3 |
47.9 |
| cyclin-like F-box protein | LC | chr5:31261407-31262670 | 20130731 |
| Soybean |
Glyma08g46590.2 |
137 |
35.2 |
46.1 |
|
| LJGI |
gnl|LJGI|TC71561 |
54.0 |
86.4 |
86.4 |
similar to UniRef100_A2Q1U7 Cluster: Cyclin-like F-box; FBD; n=1; Medicago truncatula|Rep: Cyclin-like F-box; FBD - Medicago truncatula (Barrel medic), partial (18%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0076589.1 |
length: 363 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| ProfileScan |
PS50181 |
FBOX |
9.656 |
4-52 |
| superfamily |
SSF81383 |
F-box |
2e-10 |
2-47 |
| IPR013101 |
Leucine-rich repeat 2 |
| HMMPfam |
PF07723 |
LRR_2 |
1.2e-05 |
215-240 |
| no_ID |
|
| Gene3D |
G3DSA:3.80.10.10 |
no description |
4.1e-15 |
167-272 |
| HMMPanther |
PTHR31639 |
FAMILY |
1.6e-26 |
5-245 |
| HMMPfam |
PF12937 |
F-box-like |
6.8e-06 |
7-39 |
| Seg |
seg |
seg |
NA |
50-58 |
| superfamily |
SSF52047 |
RNI-like |
6.5e-08 |
185-312 |
- Wolf-PSORT
Lj0g3v0076589.1 cyto 5, E.R. 3, cyto_plas 3, nucl 2, vacu 2, E.R._plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0076589.1 |
|