Miyakogusa Predicted Gene
- Lj0g3v0076559.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7KFW5_MEDTR |
310 |
98.0 |
98.6 |
(tr|G7KFW5) Pre-mRNA-splicing factor 38B OS=Medicago truncatula GN=MTR_5g077180 PE=4 SV=1 |
| TAIR_pep |
AT5G37370.1 |
281 |
89.7 |
95.2 |
| Symbols: ATSRL1 | PRP38 family protein | chr5:14812845-14815988 REVERSE LENGTH=393 |
| Medicago |
Medtr5g077180.2 |
310 |
98.0 |
98.6 |
| pre-mRNA-splicing factor | HC | chr5:32943383-32936664 | 20130731 |
| Soybean |
Glyma14g39220.1 |
302 |
94.6 |
98.0 |
|
| LJGI |
gnl|LJGI|TC62380 |
858 |
99.5 |
99.5 |
similar to UniRef100_A7PYY5 Cluster: Chromosome chr4 scaffold_39, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_39, whole genome shotgun sequence - Vitis vinifera (Grape), partial (56%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0076559.1 |
length: 153 aa. |
| IPR005037 |
Pre-mRNA-splicing factor 38 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR23142 |
UNCHARACTERIZED |
4.5e-72 |
13-144 |
| HMMPfam |
PF03371 |
PRP38 |
2.6e-42 |
9-148 |
- Wolf-PSORT
Lj0g3v0076559.1 cyto 7.5, cyto_E.R. 4.5, cysk 2, nucl 1, mito 1, plas 1, golg 1, nucl_plas 1, golg_plas 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0076559.1 |
|