Miyakogusa Predicted Gene

Lj0g3v0073479.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MQ05_SOYBN 449 70.8 76.3 (tr|I1MQ05) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G63120.1 341 56.1 67.4 | Symbols: ATRBL2, RBL2 | RHOMBOID-like 2 | chr1:23409054-23410725 REVERSE LENGTH=317
Medicago Medtr7g498280.1 416 67.5 73.3 | inactive rhomboid-like protein | HC | chr7:39278810-39283545 | 20130731
Soybean Glyma16g32150.1 449 70.8 76.3  
LJGI gnl|LJGI|TC59912 1891 100.0 100.0 similar to UniRef100_A7QVI2 Cluster: Chromosome chr16 scaffold_189, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_189, whole genome shotgun sequence - Vitis vinifera (Grape), partial (91%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0073479.1 length: 317 aa.
IPR002610 Peptidase S54, rhomboid
method AccNumber shortName E-value location
Molecular Function GO:0004252 serine-type endopeptidase activity    
Biological Process GO:0006508 proteolysis    
Cellular Component GO:0016021 integral to membrane    
HMMPanther PTHR22936 RHOMBOID-RELATED 2e-103 26-316
IPR022764 Peptidase S54, rhomboid domain
Molecular Function GO:0004252 serine-type endopeptidase activity    
Cellular Component GO:0016021 integral to membrane    
Gene3D G3DSA:1.20.1540.10 no description 2.3e-58 85-240
HMMPfam PF01694 Rhomboid 1.3e-50 100-243
no_ID  
HMMPanther PTHR22936:SF0 SUBFAMILY 2e-103 26-316
Seg seg seg NA 149-162
197-213
225-239
superfamily SSF144091 Rhomboid-like 1.4e-40 23-247
Putative transmembrane regions
  From To
TM segments
SOSUI		 29 51
110 132
139 161
169 191
193 215
220 241
268 290
Wolf-PSORT
Lj0g3v0073479.1	nucl 3, mito 3, cyto 2, plas 2, E.R. 2, chlo_mito 2, E.R._plas 2, cyto_E.R. 2, cyto_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0073479.1