Miyakogusa Predicted Gene

Lj0g3v0070149.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
TrEMBL I1MPC1_SOYBN 2388 79.3 88.2 (tr|I1MPC1) Uncharacterized protein OS=Glycine max PE=3 SV=2
TAIR_pep AT3G59140.1 1819 63.1 77.0 | Symbols: ATMRP14, MRP14, ABCC10 | multidrug resistance-associated protein 14 | chr3:21863519-21868701 REVERSE LENGTH=1453
Medicago Medtr6g034230.1 2283 76.7 85.6 | ABC transporter family protein | HC | chr6:11634598-11627579 | 20130731
Soybean Glyma16g28910.1 2316 77.5 86.3  
LJGI gnl|LJGI|GO023806 496 99.6 99.6 similar to UniRef100_A7QTS7 Cluster: Chromosome undetermined scaffold_171, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_171, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0070149.1 length: 1446 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 2e-22 308-566
928-1184
IPR003439 ABC transporter-like
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 7.3e-20 666-776
1274-1398
ProfileScan PS50893 ABC_TRANSPORTER_2 12.472 620-847
1233-1446
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 2e-12 651-824
1259-1442
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 ABC 4e-36 892-1215
257-603
IPR017871 ABC transporter, conserved site
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
PatternScan PS00211 ABC_TRANSPORTER_1 NA 749-763
IPR017940 ABC transporter, integral membrane type 1
ProfileScan PS50929 ABC_TM1F 27.949 308-588
920-1196
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.6e-50 1212-1445
624-833
no_ID  
Gene3D G3DSA:1.20.1560.10 no description 1.8e-52 296-604
918-1215
Gene3D G3DSA:3.40.50.300 no description 3.9e-58 626-851
1232-1445
HMMPanther PTHR24223 FAMILY 0 45-1445
HMMPanther PTHR24223:SF107SUBFAMILY NOT 0 45-1445
Seg seg seg NA 518-528
1142-1160
Putative transmembrane regions
  From To
TM segments
SOSUI
38 60
79 101
114 136
145 167
176 197
312 334
341 363
436 458
914 936
948 970
974 996
1020 1042
1044 1066
1140 1162
1180 1202
Wolf-PSORT
Lj0g3v0070149.1	plas 8, E.R. 3, chlo 1, nucl 1, vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0070149.1