Miyakogusa Predicted Gene

Lj0g3v0069539.3
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7N3E5_SOYBN 632 73.1 78.3 (tr|K7N3E5) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G54520.1 471 59.4 74.9 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:22146781-22149089 REVERSE LENGTH=457
Medicago Medtr8g467040.1 592 71.1 77.4 | transducin/WD-like repeat-protein | HC | chr8:23994630-23987514 | 20130731
Soybean Glyma20g27820.1 558 84.2 89.3  
LJGI gnl|LJGI|FS330245 829 100.0 100.0 similar to UniRef100_A7P140 Cluster: Chromosome chr19 scaffold_4, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_4, whole genome shotgun sequence - Vitis vinifera (Grape), partial (6%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0069539.3 length: 424 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.0023 119-156
167-200
216-242
359-381
387-423
HMMSmart SM00320 WD40 0.0077 116-156
161-200
203-242
245-291
342-381
384-424
ProfileScan PS50082 WD_REPEATS_2 9.239 123-165
209-251
361-390
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 9e-59 110-423
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 23.466 123-424
superfamily SSF50978 WD40 1.2e-57 104-424
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 143-157
no_ID  
HMMPanther PTHR19852 FAMILY 1.7e-148 57-424
HMMPanther PTHR19852:SF14 WD 1.7e-148 57-424
Seg seg seg NA 24-36
40-57
99-107
136-147
Putative transmembrane regions
  From To
TM segments
SOSUI		 401 423
Wolf-PSORT
Lj0g3v0069539.3	nucl 11, cyto 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0069539.3