Miyakogusa Predicted Gene

Lj0g3v0069139.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q3LUM2_GOSHI 604 95.7 99.3 (tr|Q3LUM2) Elongation factor 1-alpha OS=Gossypium hirsutum GN=EF1A5 PE=1 SV=1
TAIR_pep AT5G60390.3 590 94.3 98.0 | Symbols: | GTP binding Elongation factor Tu family protein | chr5:24289226-24290675 FORWARD LENGTH=449
Medicago Medtr1g495705.2 584 94.0 97.3 | GTP-binding elongation factor Tu family protein | HC | chr1:43065251-43067970 | 20130731
Soybean Glyma10g35700.1 602 96.3 98.0  
LJGI gnl|LJGI|TC60733 961 100.0 100.0 homologue to UniRef100_Q3LUM2 Cluster: Elongation factor 1-alpha; n=1; Gossypium hirsutum|Rep: Elongation factor 1-alpha - Gossypium hirsutum (Upland cotton) (Gossypium mexicanum), partial (36%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0069139.1 length: 301 aa.
IPR000795 Elongation factor, GTP-binding domain
method AccNumber shortName E-value location
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
HMMPfam PF00009 GTP_EFTU 2.3e-07 1-75
IPR004160 Translation elongation factor EFTu/EF1A, C-terminal
Molecular Function GO:0005525 GTP binding    
HMMPfam PF03143 GTP_EFTU_D3 1.3e-31 175-282
IPR004161 Translation elongation factor EFTu/EF1A, domain 2
Molecular Function GO:0005525 GTP binding    
HMMPfam PF03144 GTP_EFTU_D2 6.8e-16 101-167
IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel
superfamily SSF50447 Translation 3.1e-35 83-215
IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal
superfamily SSF50465 EF-Tu/eEF-1alpha/eIF2-gamma 5.7e-40 178-284
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 4.5e-24 1-102
no_ID  
Gene3D G3DSA:2.40.30.10 no description 1.5e-50 88-190
191-282
Gene3D G3DSA:3.40.50.300 no description 6e-19 1-87
HMMPanther PTHR23115 TRANSLATION 7.4e-137 1-298
HMMPanther PTHR23115:SF37 ELONGATION 7.4e-137 1-298
Wolf-PSORT
Lj0g3v0069139.1	cyto 12, nucl 1, cysk 1, cysk_nucl 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0069139.1 Not targeted -45.831 0 -0.683 66.30% -45.147