Miyakogusa Predicted Gene
- Lj0g3v0067139.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1JWD0_SOYBN |
174 |
87.4 |
92.0 |
(tr|I1JWD0) DNA-directed RNA polymerase OS=Glycine max PE=3 SV=1 |
| TAIR_pep |
AT1G68990.2 |
151 |
74.7 |
86.2 |
| Symbols: MGP3 | male gametophyte defective 3 | chr1:25935499-25940755 REVERSE LENGTH=983 |
| Medicago |
Medtr8g065900.1 |
147 |
72.4 |
83.9 |
| DNA-directed RNA polymerase-like protein | HC | chr8:27401434-27394114 | 20130731 |
| Soybean |
Glyma04g24350.1 |
174 |
87.4 |
92.0 |
|
| LJGI |
gnl|LJGI|TC71538 |
194 |
100.0 |
100.0 |
similar to UniRef100_Q8L6J3 Cluster: DNA-directed RNA polymerase 2B, chloroplast/mitochondrial precursor; n=1; Nicotiana tabacum|Rep: DNA-directed RNA polymerase 2B, chloroplast/mitochondrial precursor - Nicotiana tabacum (Common tobacco), partial (3%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0067139.1 |
length: 87 aa. |
| IPR002092 |
DNA-directed RNA polymerase, phage-type |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Molecular Function |
GO:0003899 |
DNA-directed RNA polymerase activity |
|
|
| Biological Process |
GO:0006351 |
transcription, DNA-dependent |
|
|
| HMMPanther |
PTHR10102 |
DNA-DIRECTED |
1.1e-46 |
1-87 |
| HMMPfam |
PF00940 |
RNA_pol |
1e-28 |
1-87 |
| no_ID |
|
| Gene3D |
G3DSA:3.30.70.370 |
no description |
4.4e-22 |
1-76 |
| superfamily |
SSF56672 |
DNA/RNA |
1.7e-35 |
1-87 |
- Wolf-PSORT
Lj0g3v0067139.1 cyto 8.5, cyto_E.R. 5, chlo 1, nucl 1, mito 1, extr 1, cysk 1, chlo_mito 1, cysk_nucl 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0067139.1 |
|