Miyakogusa Predicted Gene
- Lj0g3v0066299.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SG93_LOTJA |
226 |
99.1 |
99.1 |
(tr|I3SG93) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT1G48320.1 |
177 |
73.4 |
86.2 |
| Symbols: | Thioesterase superfamily protein | chr1:17855024-17855577 REVERSE LENGTH=156 |
| Medicago |
Medtr2g045050.1 |
180 |
75.2 |
88.1 |
| acyl-CoA thioesterase | HC | chr2:19598605-19601235 | 20130731 |
| Soybean |
Glyma15g20870.2 |
204 |
85.2 |
96.3 |
|
| LJGI |
gnl|LJGI|TC67302 |
759 |
99.7 |
99.7 |
similar to UniRef100_A7NW05 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (87%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0066299.2 |
length: 129 aa. |
| IPR003736 |
Phenylacetic acid degradation-related domain |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMTigr |
TIGR00369 |
unchar_dom_1: |
7.1e-20 |
23-119 |
| IPR006683 |
Thioesterase superfamily |
| HMMPfam |
PF03061 |
4HBT |
7.8e-15 |
52-124 |
| no_ID |
|
| Gene3D |
G3DSA:3.10.129.10 |
no description |
4.8e-32 |
19-121 |
| HMMPanther |
PTHR12418 |
FAMILY |
8.2e-29 |
13-123 |
| HMMPanther |
PTHR12418:SF4 |
SUBFAMILY |
8.2e-29 |
13-123 |
| Seg |
seg |
seg |
NA |
3-20 |
| superfamily |
SSF54637 |
Thioesterase/thiol |
8.3e-24 |
11-120 |
- Wolf-PSORT
Lj0g3v0066299.2 cyto 6, nucl 4, chlo 3, cyto_pero 3, cyto_E.R. 3, cyto_plas 3
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0066299.2 |
|