Miyakogusa Predicted Gene

Lj0g3v0066219.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7LB54_MEDTR 960 88.8 93.2 (tr|G7LB54) ABC transporter OS=Medicago truncatula GN=MTR_8g075040 PE=3 SV=1

TAIR_pep AT3G54540.1 893 82.6 89.4 | Symbols: ATGCN4, GCN4 | general control non-repressible 4 | chr3:20190393-20192564 FORWARD LENGTH=723

Medicago Medtr7g018380.1 963 88.8 93.2 | ABC transporter family F protein PpABCF protein | HC | chr7:5948553-5943785 | 20130731

Soybean Glyma13g22700.1 943 88.8 92.8

LJGI gnl|LJGI|BW596165 930 99.6 99.6 similar to UniRef100_Q65CB1 Cluster: ABC transporter; n=1; Populus tremula x Populus tremuloides|Rep: ABC transporter - Populus tremula x Populus tremuloides, partial (21%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0066219.1 length: 527 aa.

IPR003439 ABC transporter-like

method AccNumber shortName E-value location

Molecular Function GO:0005524 ATP binding

Molecular Function GO:0016887 ATPase activity

HMMPfam PF00005 ABC_tran 5.2e-17 4-151
341-452

ProfileScan PS50893 ABC_TRANSPORTER_2 16.033 1-226
300-525

IPR003593 AAA+ ATPase domain

Molecular Function GO:0000166 nucleotide binding

Molecular Function GO:0017111 nucleoside-triphosphatase activity

HMMSmart SM00382 ATPases 1.1e-11 1-195
326-502

IPR017871 ABC transporter, conserved site

Molecular Function GO:0005524 ATP binding

Molecular Function GO:0016887 ATPase activity

PatternScan PS00211 ABC_TRANSPORTER_1 NA 123-137

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 2.2e-31 264-515
2-206

no_ID

Coil coil coiled-coil NA 215-236

Gene3D G3DSA:3.40.50.300 no description 6.8e-41 81-205
298-516

HMMPanther PTHR19211 ATP-BINDING 2.6e-276 1-527

HMMPanther PTHR19211:SF14 ATP-BINDING 2.6e-276 1-527

Seg seg seg NA 251-266

Wolf-PSORT

Lj0g3v0066219.1 cyto 10, mito 4

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0066219.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7LB54_MEDTR	960	88.8	93.2	(tr\|G7LB54) ABC transporter OS=Medicago truncatula GN=MTR_8g075040 PE=3 SV=1
TAIR_pep	AT3G54540.1	893	82.6	89.4	\| Symbols: ATGCN4, GCN4 \| general control non-repressible 4 \| chr3:20190393-20192564 FORWARD LENGTH=723
Medicago	Medtr7g018380.1	963	88.8	93.2	\| ABC transporter family F protein PpABCF protein \| HC \| chr7:5948553-5943785 \| 20130731
Soybean	Glyma13g22700.1	943	88.8	92.8
LJGI	gnl\|LJGI\|BW596165	930	99.6	99.6	similar to UniRef100_Q65CB1 Cluster: ABC transporter; n=1; Populus tremula x Populus tremuloides\|Rep: ABC transporter - Populus tremula x Populus tremuloides, partial (21%)

IPR003439	ABC transporter-like
Lj0g3v0066219.1				length: 527 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005524	ATP binding
Molecular Function	GO:0016887	ATPase activity
HMMPfam	PF00005	ABC_tran	5.2e-17	4-151 341-452
ProfileScan	PS50893	ABC_TRANSPORTER_2	16.033	1-226 300-525
IPR003593	AAA+ ATPase domain
Molecular Function	GO:0000166	nucleotide binding
Molecular Function	GO:0017111	nucleoside-triphosphatase activity
HMMSmart	SM00382	ATPases	1.1e-11	1-195 326-502
IPR017871	ABC transporter, conserved site
Molecular Function	GO:0005524	ATP binding
Molecular Function	GO:0016887	ATPase activity
PatternScan	PS00211	ABC_TRANSPORTER_1	NA	123-137
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	2.2e-31	264-515 2-206
no_ID
Coil	coil	coiled-coil	NA	215-236
Gene3D	G3DSA:3.40.50.300	no description	6.8e-41	81-205 298-516
HMMPanther	PTHR19211	ATP-BINDING	2.6e-276	1-527
HMMPanther	PTHR19211:SF14	ATP-BINDING	2.6e-276	1-527
Seg	seg	seg	NA	251-266